Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst7g00078 ATGAGAAGTATAATTCCTCAAGGGAACTTCAGGGCCAGAACTAGTCCCCGCGATGCTGAAAGGACGGTTCTCATTGTTCCTGATACTACCCTGTCAAATGCACTTTTGGATAAGCCTTCTACTTCAAGGACACTCTCTCTTAGTGGTAAAGGTTCATTCTCTCCATTGTCAAAGGTTGCCCACTCATTACCGGTTACTCCAATTGCATCTTTGGGTCAAGAAAGTGTACACGGCAGACATCTGGGATGTGCTTCTGATTTAAATACAATGGTTGTCAAGCAGCACATAACTCGATCACTTTCGGTTCCAGTGGATGCCAAAGCCACCAAATTGAGGTGCACTCAGTCTAGGGTCTTGATTCGTATCATTTCAGCCAGGCGGCATCTTGCAACTGTTGATGGAACTTCAACTGGTGATGCTTCAGTCATGGAGATTGCTATTGAGGATGCTACAGCAGATATTCCAGAGGAAGAAGCAGTTTGTAGGATTTGTTTGGCAGAGCTCGGGGAAGGAGAAAATACGCTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCGCTTGCTCATCAAGACTGTGCGGTAAAGTGGTTTAGTATTAAGGGCAACAGGACCTGTGATGTCTGCAAGCAGGATGTTCAAAACCTCCCGGTAACACTATTGAAAATTTATGATCGTCAACCCCCTGCCAGACAGCCATCAAATGTGCCACAACCAAGGGAAATAGCTTATTACAGGATCTGGAATGATATACCTGTACTTGTCTTGGTTAGCATGCTTGCTTACTTCTGCTTTTTGGAGCAACTACTGGTTTCAGATTTGGGTCCTCGAGCTCTCGCAATTGCGTTACCTTTCTCCTGTGTTTTGGGTCTCCTAACATCTATGATTGCGTCAACCATGGTGAGCAGGAGTTACGTATGGGCTTATGCTTGCTTCCAGTTCGCAATTCTCATCTTGTTTGCTCACGTATTTTTTAATATGCTTAATGTCAATCCAATTCTGTCGATCCTTCTTTCCTCATTCATTGAATTCGGGATGACAATAAGCATGAATTGTCTCCTTTCGGAATATGTTAGATGGAGAGCAAATAGGCAGAATCAAACACCCAATGAGAATGGTAACAGTCTACAGCAGCAGCATCAAGAACAAATAGAGCAACAAGAGCAACATCGATGA 1173 0.4373 MRSIIPQGNFRARTSPRDAERTVLIVPDTTLSNALLDKPSTSRTLSLSGKGSFSPLSKVAHSLPVTPIASLGQESVHGRHLGCASDLNTMVVKQHITRSLSVPVDAKATKLRCTQSRVLIRIISARRHLATVDGTSTGDASVMEIAIEDATADIPEEEAVCRICLAELGEGENTLKMECSCKGDLALAHQDCAVKWFSIKGNRTCDVCKQDVQNLPVTLLKIYDRQPPARQPSNVPQPREIAYYRIWNDIPVLVLVSMLAYFCFLEQLLVSDLGPRALAIALPFSCVLGLLTSMIASTMVSRSYVWAYACFQFAILILFAHVFFNMLNVNPILSILLSSFIEFGMTISMNCLLSEYVRWRANRQNQTPNENGNSLQQQHQEQIEQQEQHR 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst7g00078 390 PANTHER OS02G0165000 PROTEIN 2 378 - -
Arst7g00078 390 Pfam RING-variant domain 161 208 IPR011016 GO:0008270
Arst7g00078 390 CDD RING_CH-C4HC3_MARCH 161 209 - -
Arst7g00078 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 216 IPR013083 -
Arst7g00078 390 MobiDBLite consensus disorder prediction 367 382 - -
Arst7g00078 390 SUPERFAMILY RING/U-box 157 212 - -
Arst7g00078 390 SMART ringv_2 160 209 IPR011016 GO:0008270
Arst7g00078 390 ProSiteProfiles Zinc finger RING-CH-type profile. 153 215 IPR011016 GO:0008270
Arst7g00078 390 MobiDBLite consensus disorder prediction 367 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst7g00078 Arst-Chr7 494018 498787 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst7g00078 144 215 C3H Transcription Factor Family AT2G37950 46.575 3.94e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst7g00078 - - ahf:112765571 739.569