Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g04233 ATGGCTGAACCCGCCGTCACCGACGCCGATAAAACAATCACCACCACCACATTGCCGTCGCTCAACATCGACGAATTATCGATCGACGAAAACAAGAAACCTCCGAAGCTATTAGACGATCCGGAAGACTCCAATATCCAAGCGGTTAGTTCTGACGACACGCCGTACACCTCGGCGGCGACGTTCGAGGAATTGAACTTGTCGGCGGAGCTTTTGAAAGGACTCTACGTTGAGATGAAGTTCCAGAAACCGAGCAAGATCCAAGCTATAAGCTTGCCGATGATCTTGAATCCGCCGCACCGTGATTTGATCGCTCAGGCTCACAACGGTTCCGGCAAGACCACGTGCTTTGTTTTAGGGATGCTTAGTCGTGTGGATCCTTCGACGCAAGCTACTCAAGCTCTCTGCATTTGTCCAACGAGGGAGCTTGCTATTCAGAACACTGAAGTTCTCCGGAAGATGGGGAAGCACACAGGGATTAGCTCGCACTGTGCCGTTCCGACGGATAGCAGGGATTCAATTCCAATTCAAAAAGGGGAGAAAATTAAGGCTCAGGTGGTTATTGGGACTCCTGGCACTATCAAGAAGTGGATTTCATTCAAGAAATTGGAGGTGACCAAATTGACGATTCTTGTCTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGTTTTAAGGATGATTCCTTGAGGATAATGAAAGAAATAGAAAAATCCAATTCTAGCTGCCAGGTTCTTCTATTTTCTGCCACATTCAATGACATTGTCAAGAACTTTGTTGAGAGGACAGTTAAAAAGGACCATAATAAACTTTTTGTTAAGAAAGAAGAGCTTTCTTTAGACGCTGTCAAGCAATATAAAGTGCAGTGCACTGATGAGTTGTCGAAGATTGAGGTGATAAAAGATTACATATTCGAGTTAGGAGAAAATGTGGGCCAAACCATCATATTCGTGCGCACGAGACAGAGTGCAAAAATGCTGCACAAGTCACTTGTCAATATGGGTTACGAGGTGACTTCGATACAAGGTGCTCCTGACCATGAAGAGAGAGACAAAATTGTCAAAGAGTTCAGAGATGGTTTGACTCAAGTTCTTATATCGACGGATGTTCTTGCTCGAGGCTTTGATCAGCAACAGGTCAATTTGGTTATCAACTATGATCTCCCAATAAAACATACTGCGGAGTATACACGGGAATTTGAGCCTGATTATGAGGTGTACTTGCACAGAGTTGGTAGGGCTGGTCGATTTGGCCGCAAGGGGGCTGTGTTTAACCTAATACATGATGAAAAAGATGAAAGGCTGATGTCAAAGATCGAGAACCATTTTGGCACCCGTGTATCAGAGGTACGAGAAAAAAGTGTCGAAGACTATAAAGCTGCACTTAAGGAAGCCGGTCTACTACAAGCATACTCAGAACTGAATCGGTGA 1431 0.4486 MAEPAVTDADKTITTTTLPSLNIDELSIDENKKPPKLLDDPEDSNIQAVSSDDTPYTSAATFEELNLSAELLKGLYVEMKFQKPSKIQAISLPMILNPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPSTQATQALCICPTRELAIQNTEVLRKMGKHTGISSHCAVPTDSRDSIPIQKGEKIKAQVVIGTPGTIKKWISFKKLEVTKLTILVFDEADQMLAEDGFKDDSLRIMKEIEKSNSSCQVLLFSATFNDIVKNFVERTVKKDHNKLFVKKEELSLDAVKQYKVQCTDELSKIEVIKDYIFELGENVGQTIIFVRTRQSAKMLHKSLVNMGYEVTSIQGAPDHEERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPIKHTAEYTREFEPDYEVYLHRVGRAGRFGRKGAVFNLIHDEKDERLMSKIENHFGTRVSEVREKSVEDYKAALKEAGLLQAYSELNR 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g04233 476 CDD DEADc_DDX19_DDX25 67 266 - -
Arst6g04233 476 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 54 436 - -
Arst6g04233 476 Pfam DEAD/DEAH box helicase 86 258 IPR011545 GO:0003676|GO:0005524
Arst6g04233 476 SMART helicmild6 325 418 IPR001650 -
Arst6g04233 476 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 60 89 IPR014014 GO:0003724
Arst6g04233 476 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 299 459 IPR001650 -
Arst6g04233 476 Pfam Helicase conserved C-terminal domain 296 418 IPR001650 -
Arst6g04233 476 Gene3D - 38 277 IPR027417 -
Arst6g04233 476 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 94 270 IPR014001 -
Arst6g04233 476 SMART ultradead3 80 286 IPR014001 -
Arst6g04233 476 MobiDBLite consensus disorder prediction 26 40 - -
Arst6g04233 476 MobiDBLite consensus disorder prediction 25 53 - -
Arst6g04233 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 436 IPR027417 -
Arst6g04233 476 Gene3D - 280 462 IPR027417 -
Arst6g04233 476 CDD SF2_C_DEAD 283 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g04233 Arst-Chr6 110439775 110442781 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g04233 26 450 Eukaryotic Initiation Factors Gene Family AT1G72730 35.402 2.25e-71 230