Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g04196 ATGGGTTGGCTTAGCAAATTTTTTAAAGGCTCCGACCAAAAGATTTCGGAAGGGCATTACCATTCATATTATAACGGGGATGCGAATTCTTACTTGCCGTCGACGTCTGGTGTAACAAATGATGTTTGGCCTGAGAATGAGAAAGAAGATATAGATCATGCCATTGCATTATCTCTGGCAGAGCAAAATCATAGAGGAAACCATGTAAATGACTACAGATCTCAATTAGAAGAAGATGAACAACTTGCCAGAGCTATAGAAGAAAGCCTAAATCTAGAGTCTCCTCCCAAATATGGAAACGAAAACATGTAACAACCCCATCCGGCGGTTCCAATTCCAGTACCAGTGTATTTCCCAATGGGATCAAGGATTTGTGCCAGCTGCCATAATGAGATTGGTTATGGACGATACCTAAATTGTTTGAATGCTTTCTGGCATACTGAATGCTTCCGCTGTCATGCTTGCAACCTACCGATCTCTGATTATGAGTTCTCCACGTCGGGAAATTACCCTTACCATAAATCATGCTATAAGGAAAGCTACCATCCAAAATGGCACATCCATTCTGGGTCCAAAAATATTGCCCTTCTCATGAACACGATAACACTCCAAGATGTTGCAGCTGTGAGCGAATGGAGCTACAAGAGGCTGGATATATCAGTCTTAATGATGGCCGGAAGCTTTGCTTAG 690 0.4217 MGWLSKFFKGSDQKISEGHYHSYYNGDANSYLPSTSGVTNDVWPENEKEDIDHAIALSLAEQNHRGNHVNDYRSQLEEDEQLARAIEESLNLESPPKYGNENMXQPHPAVPIPVPVYFPMGSRICASCHNEIGYGRYLNCLNAFWHTECFRCHACNLPISDYEFSTSGNYPYHKSCYKESYHPKWHIHSGSKNIALLMNTITLQDVAAVSEWSYKRLDISVLMMAGSFA 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g04196 229 Coils Coil 69 89 - -
Arst6g04196 229 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 117 150 - -
Arst6g04196 229 Pfam LIM domain 125 179 IPR001781 -
Arst6g04196 229 FunFam Protein DA1-related 1 119 178 - -
Arst6g04196 229 SMART uim 46 65 IPR003903 -
Arst6g04196 229 SMART uim 77 96 IPR003903 -
Arst6g04196 229 CDD LIM_DA1 125 177 - -
Arst6g04196 229 SMART lim_4 124 176 IPR001781 -
Arst6g04196 229 ProSiteProfiles LIM domain profile. 123 183 IPR001781 -
Arst6g04196 229 Gene3D Cysteine Rich Protein 121 213 - -
Arst6g04196 229 PANTHER PROTEIN DA1-RELATED 2 3 187 IPR045218 -
Arst6g04196 229 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 77 96 IPR003903 -
Arst6g04196 229 ProSitePatterns LIM zinc-binding domain signature. 125 159 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g04196 Arst-Chr6 109995716 110001222 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Arst6g04196 LIM 1.8e-06 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g04196 - - adu:107495965 491.115