Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g04186 ATGGAAAATGATATGTTCTTCCATCAGGGATGGCCATCGTTTGTGGGAGATCATCATCTGGAATGCGGTGATCTGTTGGTTTTCAGATATGAAGGTTACCTAAATTTCACCGTGCAAGTATTTGACAAGAATAAATGTGAAAAACTGGGATTAAATTCTGAATGCAGTCAAAATTCAGGCAACTTTGATAATATAAGAGGTCACAAAAGAGATAGGAATGAGAAATCCTCTCTGGATGTTATTGTTGAAGGGGCTACAAAGAAAATGAGAGGCAACAATGCCGACAACCAAGAACTTAAGCTGAGTATAGTTGGGAAAGACATATTGCAATATGAGTTAGTAAAACCTATTAGTATGTTCAAAGAAAAAGAAGAAACTTCCAGAGCATGTTCAACTAATGACATTCCGTTGCCTTTTCATGTGGGGAATAGCAATGAAGATGAAGATGCTGATCAATATATTCTGAATGGTATTTCACTATCAAACTTAGCAGCACATGATGAGAAAAAAGTAGCTCGATCATTTACTTCATCTTTTCCATATTTTGTAAGGATCATGAAAAGCTTCAACGTTAGCGGTTCATATACTCTGAATATCCCGTATCAATTTTCAATGGCACATCTCCCAAACTGCAAGATAAAGATTATCCTCCATAATTTGAAAGGAGAACATTGGACTGTTAATTCTGTGCCATCAACAAGAGTGCATACAAGTCACACTCTCTGCGGAGGATGGATGGCCTTTGTGCGTGGCAATAACATAAAGGTTGGAGATGTCTGCATTTTTGAACTCGTGCATGAGTGTGAATTACTTGTTCGTATTGCTGGAGGTGGAAAAGATCTACAAGACCCGGTTGCGAAACCAGATTTAAGTAACCCTAGTGCAGGACATGCTATCACTTGCCATAAGGCTTCAAGATATATGTCGGTGAATCCTAAAGACAACCCAAAAAACATAATAAACGTTGATCAATCAGTTAAAAAGCGGTCAAAGGTTGGTCAAGAAGCTGCTTTTTCCATTGAATTAAGGAAATCTGGTAAAAGATCAAATTCTTCTAAGAAAACGGGGCTTGGCAATCGGACGAAAGCTGCCAATAAAAAGTTGGAGACAGCTGCTCAGAAGAGGCATCGTGTTGAAGATGAATTAAGCTCACAAGCTAATGCTGGTTTGAGAATGTTGTTTGCACTCGATGAACAAAGAGTGGCTCAAGCCTTTACTTCCCCTTTTCCTAATTTTGTGAAAATCATGAAAAAGTTCAATGTCAGTGGATCATACACTTTGAAAATCCCATACCAGTTCTCTGCTGCACATCTCCCAGCCTACAAAACAGAAATTATTCTTCGAAATTTAAAAGGTGAAAGTTGGACTGTGAACTCTGTACCGGACGCAAAAGGCAGAACGGTGCATACCTTTTGTGGTGGATGGATGGCCTTTGTTCGCGATAATGACATCAATTTTGGGGACACATGCATATTCGAACTTGTTGCTCAGGGTGAGATGCGGGTTTATATATCTGGGGTGGGAAAGGAGGGGCTTGAACATCAAAATGGTCAAGTGAAACTTAATAGATTATTGGCCAACGTTCCATCTACCTGCTAA 1599 0.3934 MENDMFFHQGWPSFVGDHHLECGDLLVFRYEGYLNFTVQVFDKNKCEKLGLNSECSQNSGNFDNIRGHKRDRNEKSSLDVIVEGATKKMRGNNADNQELKLSIVGKDILQYELVKPISMFKEKEETSRACSTNDIPLPFHVGNSNEDEDADQYILNGISLSNLAAHDEKKVARSFTSSFPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPSTRVHTSHTLCGGWMAFVRGNNIKVGDVCIFELVHECELLVRIAGGGKDLQDPVAKPDLSNPSAGHAITCHKASRYMSVNPKDNPKNIINVDQSVKKRSKVGQEAAFSIELRKSGKRSNSSKKTGLGNRTKAANKKLETAAQKRHRVEDELSSQANAGLRMLFALDEQRVAQAFTSPFPNFVKIMKKFNVSGSYTLKIPYQFSAAHLPAYKTEIILRNLKGESWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVAQGEMRVYISGVGKEGLEHQNGQVKLNRLLANVPSTC 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g04186 532 ProSiteProfiles B3 DNA-binding domain profile. 412 508 IPR003340 GO:0003677
Arst6g04186 532 SMART B3_2 182 278 IPR003340 GO:0003677
Arst6g04186 532 SMART B3_2 412 508 IPR003340 GO:0003677
Arst6g04186 532 Gene3D - 1 46 IPR015300 -
Arst6g04186 532 Gene3D - 164 276 IPR015300 -
Arst6g04186 532 Gene3D - 397 507 IPR015300 -
Arst6g04186 532 SUPERFAMILY DNA-binding pseudobarrel domain 175 275 IPR015300 -
Arst6g04186 532 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 280 IPR044837 -
Arst6g04186 532 SUPERFAMILY DNA-binding pseudobarrel domain 3 48 IPR015300 -
Arst6g04186 532 CDD B3_DNA 180 274 IPR003340 GO:0003677
Arst6g04186 532 Coils Coil 361 381 - -
Arst6g04186 532 CDD B3_DNA 410 504 IPR003340 GO:0003677
Arst6g04186 532 MobiDBLite consensus disorder prediction 343 380 - -
Arst6g04186 532 Pfam B3 DNA binding domain 412 504 IPR003340 GO:0003677
Arst6g04186 532 Pfam B3 DNA binding domain 182 273 IPR003340 GO:0003677
Arst6g04186 532 ProSiteProfiles B3 DNA-binding domain profile. 1 44 IPR003340 GO:0003677
Arst6g04186 532 CDD B3_DNA 3 42 IPR003340 GO:0003677
Arst6g04186 532 ProSiteProfiles B3 DNA-binding domain profile. 182 278 IPR003340 GO:0003677
Arst6g04186 532 SUPERFAMILY DNA-binding pseudobarrel domain 405 506 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g04186 Arst-Chr6 109874148 109877127 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g04186 347 511 B3 DNA Binding Superfamily AT5G42700 29.091 1.85e-15 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Arst6g04186 B3 2e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g04186 - - adu:107495829 1072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g04186 6 109874148 109877127 Arst6g04186 6 109874148 109877127 ECH