Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g04080 ATGGCTGTGGAGTTTATAACCGGTTATGATCGTGGTGGTGATGGTGATCATAGTTTTGTCGGTAACAACGACGCGACGACGGCGGCAACAGTGGGAGAAGCAGCTTGTGGTGGCATTCAGCGTGTTGAGAAGCTCATGGACATGATTTCAGAACAAAAACATGAAGAAAATGATGATTATTCATCACTTGAAAAAGAAGAATTTGCAGGTGTTGTTGTTTCAATTCTTGACAACAACAAACCAAGAACAAGATTATTGGGCCATGCTCGTTTCAGAAGAGCTCCATCAACAACTACTCTTCTTCCTAATAATCTTCAATTGCAGCAAATGGATCATGAAAAAGAAACAATCAATGCAACAAGATTTTTTGAATTATCCAAAGAAAAAGATGGTTTTTCTCCACAACAAAGAAGTAAGGAGGAGCAAGTTTCTTCTTCTGCTTTCAAGCTTTATTGTCCTACATCAATTCTACCTCCTCTGCCTCAAAGGAAGAGCAATAATTACCATGATTACCCTTCAAGATTTTCCCATAATCAAAAGAACAATAATGTTGAAGCAAACAATGGCTCTTCTACAAGCATTGACTTTTCTACAACAAACTCTTATACTTACTTGTCAACGTTGACTAATAATATTGATGATGATCATAGCTTGCAAATTCAAAGGGTGTCACTTAATAAGGGTTCTTCTTCTTATATGCAAAAACCACCCTTATCCAATTCATCTTTGAATAAGAGGAAGTGCAATTCATTGGATAATAATGTTCAATCCTCCTCTTCAAAGTGCCATTGCTATAAGAAAAGGAAATCGAAGTTGAAGAGAGTGATTAGAGTGGCAGCAATTAGTTCAAAGACTGCTGATATTCCATCAGATGATTTCTCTGGGAGAAAATATGGTCAGAAACCTATTAAGGGCTCTCCTCACCCTAGAGGTTATTACAAATGTTCGAGCGTGAGAGGATGCCCTGCACGTAAACACGTGGAGCGTGCCGTAGACGATCCAAACATGCTTGTTGTAACTTATGAAGGAGAACACAATCATACATTAACACATGATGATTATGCTAATGATGCTGTTATCCTCCAATCATCTTAA 1095 0.3799 MAVEFITGYDRGGDGDHSFVGNNDATTAATVGEAACGGIQRVEKLMDMISEQKHEENDDYSSLEKEEFAGVVVSILDNNKPRTRLLGHARFRRAPSTTTLLPNNLQLQQMDHEKETINATRFFELSKEKDGFSPQQRSKEEQVSSSAFKLYCPTSILPPLPQRKSNNYHDYPSRFSHNQKNNNVEANNGSSTSIDFSTTNSYTYLSTLTNNIDDDHSLQIQRVSLNKGSSSYMQKPPLSNSSLNKRKCNSLDNNVQSSSSKCHCYKKRKSKLKRVIRVAAISSKTADIPSDDFSGRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPNMLVVTYEGEHNHTLTHDDYANDAVILQSS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g04080 364 Gene3D WRKY domain 273 349 IPR036576 GO:0003700|GO:0006355|GO:0043565
Arst6g04080 364 MobiDBLite consensus disorder prediction 159 192 - -
Arst6g04080 364 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 108 352 IPR044810 GO:0003700
Arst6g04080 364 MobiDBLite consensus disorder prediction 227 254 - -
Arst6g04080 364 Pfam WRKY DNA -binding domain 291 347 IPR003657 GO:0003700|GO:0006355|GO:0043565
Arst6g04080 364 SUPERFAMILY WRKY DNA-binding domain 285 349 IPR036576 GO:0003700|GO:0006355|GO:0043565
Arst6g04080 364 ProSiteProfiles WRKY domain profile. 284 350 IPR003657 GO:0003700|GO:0006355|GO:0043565
Arst6g04080 364 SMART WRKY_cls 289 349 IPR003657 GO:0003700|GO:0006355|GO:0043565
Arst6g04080 364 Pfam Plant zinc cluster domain 245 287 IPR018872 -
Arst6g04080 364 Coils Coil 46 66 - -
Arst6g04080 364 FunFam WRKY transcription factor 65 273 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g04080 Arst-Chr6 108942779 108946244 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g04080 224 347 WRKY Transcription Factor Family AT2G24570 56.338 1.71e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Arst6g04080 WRKY 4.3e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g04080 - - lja:Lj0g3v0162929.1 281.182