Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03964 ATGGGGGGCCATGAGAATGCAATGGGGTTTCATCATGGAAATGAGAGCATTCTGACAAATAATGTTAATGTCTCAGAAATGGATATGAGTTCTTCTATGTCATTGGCTAGGTCTTCTTCAGATGTTGTTGTACCTAATAGTAACCCTTTTCTTGCTTCTTCTTCTTCTTGGGATCCAATTGTTTCCTTAAGCCAATCTCAAACTTTTGGAGGGTCATCAATGGTTACTACTCACAATAGTGATTTTGGAAATTCCTCATCTTACCCTTTTGTTCAATATATGTCTGACTCAACCAATCTTGAGGGCATTATGGTCCACAAAATTCCATCTTTTGGTAGTGGAAACTTCTCAGAAATTGTTGGATCCTTTTGTCAAGAAGGGTCTTCTGATATACCTAACATGGGGTTTAGACCAAGTTATAATCATGGCAATGATGCTGGAACCGAAAGAGCTACAATGAATGAACAATCTCAGGTTGAGGACTCAATTACTGAAGATGGTGCACCAGGAACTGCACCTAGTGGAAATCGAAGAAAGCGCATGCTTGATCATGATTCTTCTTTCAGTCCAAACAAGAATGCTGGTGGCGATGAACTGAAAGACTCTCCAAGGACGATATCTGATGGTGCTAAAGAACACGAAAAGAAGGCGAAAGTCGAGCAGAATGTGAGTGCTGATTTGCGAGGCAAGCAACCGGCAAAGCAATCAAAAGAAAATTCTCCAAGTGGAGAAGCTCCTAAAGAAAATTTCATCCATGTGAGAGCAAGAAGGGGTCAAGCTACAAACAGTCACAGCCTTGCAGAAAGGGTGAGAAGAGAAAAGATTAGTGAGAGAATGAGATTGCTCCAAGAACTTGTTCCAGGGTGCAACAAGATAACTGGCAAAGCAGTAATGCTGGATGAGATTATAAACTATGTGCAGTCACTGCAGCAACAAGTTGAGTTTTTGTCCATGAAACTTGCCACAGTGAACCCGGAACTGAATTTTGACGTAGAACGGATCCTGTCGAAGGAAATTCTTCAATCGCGCTTAGGACATGGAATTGTTGGATATGGTGTTGGTATGAACTCCCCTCACCCATTCTCCAATGGAAGTTTTCAAGGAAACATGGCTGGCATGCCTAGTACATCAACACAATTCCCTCCTTTGCCTCAGGGTGTTTTGGATCATGAGTTCCAAAGTCTTTATGGAATGGGGTATGATCCTAATACAGCACTTGACAATTTGGGACCAAATGTGTCATGTTTATCAGGAAGATTGAAAACAGAATTATAG 1275 0.4141 MGGHENAMGFHHGNESILTNNVNVSEMDMSSSMSLARSSSDVVVPNSNPFLASSSSWDPIVSLSQSQTFGGSSMVTTHNSDFGNSSSYPFVQYMSDSTNLEGIMVHKIPSFGSGNFSEIVGSFCQEGSSDIPNMGFRPSYNHGNDAGTERATMNEQSQVEDSITEDGAPGTAPSGNRRKRMLDHDSSFSPNKNAGGDELKDSPRTISDGAKEHEKKAKVEQNVSADLRGKQPAKQSKENSPSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERILSKEILQSRLGHGIVGYGVGMNSPHPFSNGSFQGNMAGMPSTSTQFPPLPQGVLDHEFQSLYGMGYDPNTALDNLGPNVSCLSGRLKTEL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03964 424 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 257 327 IPR036638 GO:0046983
Arst6g03964 424 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 259 309 IPR011598 GO:0046983
Arst6g03964 424 Gene3D - 256 330 IPR036638 GO:0046983
Arst6g03964 424 SMART finulus 265 315 IPR011598 GO:0046983
Arst6g03964 424 FunFam Basic helix-loop-helix transcription factor 256 328 - -
Arst6g03964 424 MobiDBLite consensus disorder prediction 145 164 - -
Arst6g03964 424 CDD bHLH_AtBPE_like 249 334 - -
Arst6g03964 424 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 153 365 IPR024097 GO:0006355
Arst6g03964 424 MobiDBLite consensus disorder prediction 135 247 - -
Arst6g03964 424 MobiDBLite consensus disorder prediction 197 223 - -
Arst6g03964 424 Pfam Helix-loop-helix DNA-binding domain 262 310 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03964 Arst-Chr6 107911102 107915254 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03964 1 424 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 41.763 7.34e-81 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst6g03964 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03964 - - gmx:100794464 547.354