Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03947 ATGAATTTTGATCTTGGTCTTGCTCTTGGAATTGGCTTCCATGATCAAGAGAAGAATTGCATGAAGAGAAAGGAGGATGATCCATCAAGAAAATGCAATAATAAGGCATACCCATCTCTTACATTAGGACCAGCAATAATTGATGATGATGATAATCATAATCAAGGTTCAAAGATTATTGAAGACTCTAATAATTCTTCTCCAAGTGCAGTGTCATCATTTTCCAACTCTTCTATCATAATCAAGAAGGAGAAAGATCAAGAATTTGAGGTTGAGATTGATGAGAAGGCTCCATCATCATCAAGGGATGAAGATGGTAACAACACAAAAAGGAAGAAACTTAGGCTCACAAAAGAACAATCTACAATCTTGGAGGAAAGCTTCAAGAACCATTCTAATCCCAATCCGAAGCAAAAGCAAGAATTGGCAACACACTTGCATCTGCTGCCGAGACAAGTGGAGGTATGGTTTCAGAACAGGAGAGCCAGGACAAAGCTGAAACAAACAGAATCAGATTGTGAGTTCCTGAAGAAGTGCTACGAAAGTCTAACAGAAGAGAATAAGAGGCTCCAAAACGAGCTTCAAGAACTCAAATCAATGCAAACAACAACACCCTTTTCCATGCAAATTCCACCAACAACTCTTACTATATGCCCTTCTTGTGAGACAATTGCTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGGGGAATTATTGCTTATAAGTTCAAAAGCTCATCAACATCATAATCATTTCTACAAAAATAATGGATATCCATTATTCAAACACTCATCATCCGCAACATGCTAG 831 0.355 MNFDLGLALGIGFHDQEKNCMKRKEDDPSRKCNNKAYPSLTLGPAIIDDDDNHNQGSKIIEDSNNSSPSAVSSFSNSSIIIKKEKDQEFEVEIDEKAPSSSRDEDGNNTKRKKLRLTKEQSTILEESFKNHSNPNPKQKQELATHLHLLPRQVEVWFQNRRARTKLKQTESDCEFLKKCYESLTEENKRLQNELQELKSMQTTTPFSMQIPPTTLTICPSCETIANNNNNNNNNNNNNNNNNGELLLISSKAHQHHNHFYKNNGYPLFKHSSSATC 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03947 276 ProSiteProfiles 'Homeobox' domain profile. 107 167 IPR001356 GO:0003677
Arst6g03947 276 SUPERFAMILY Homeodomain-like 99 168 IPR009057 -
Arst6g03947 276 Coils Coil 166 203 - -
Arst6g03947 276 MobiDBLite consensus disorder prediction 20 75 - -
Arst6g03947 276 MobiDBLite consensus disorder prediction 58 75 - -
Arst6g03947 276 MobiDBLite consensus disorder prediction 91 120 - -
Arst6g03947 276 Pfam Homeobox associated leucine zipper 167 200 IPR003106 GO:0006355|GO:0043565
Arst6g03947 276 Pfam Homeodomain 110 165 IPR001356 GO:0003677
Arst6g03947 276 ProSitePatterns 'Homeobox' domain signature. 142 165 IPR017970 GO:0000981|GO:0006355
Arst6g03947 276 Gene3D - 103 174 - -
Arst6g03947 276 CDD homeodomain 110 168 IPR001356 GO:0003677
Arst6g03947 276 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 5 239 - -
Arst6g03947 276 SMART halz 167 210 IPR003106 GO:0006355|GO:0043565
Arst6g03947 276 SMART HOX_1 109 171 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03947 Arst-Chr6 107769483 107772155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03947 103 249 Homeobox Transcription Factor Family AT4G37790 57.143 1.23e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Arst6g03947 Homeodomain 7.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03947 K09338 - gmx:100797650 256.914