Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03913 ATGGCATACCAAGCGATTCAGGGCCCAAGCTCGGGATCGAGTTCAAGTTCGGGGTTTCAGTTATTGAACTCTCCTTTCGGTGACACCACATACACCAAGGTTTTCGTCGGAGGGCTGGCATGGGAGACTCAAAGTGAAACCATGCGCCGCCACTTCGAGCAGTTTGGTGAAATTCTTGAGGCCGTAGTAATCACTGACAAGAACACCGGGAGATCCAAAGGATATGGTTTTGTGACTTTCCGGGATCCCGAGGCTGCTAGGAGAGCGTGTGCTGATCCAACTCCAATCATTGATGGTAGAAGAGCTAATTGTAACTTGGCTTCACTCGGTCGACCACGCCCTCCGCTGCCTTATGGACGGATAAGACCAGCCTCCCCATATGTTGGAGGTTTGCAACCAGCGAGAGGAGCCTTTTTGGGAAGTTTCGGCTACCAGCAACCAGTTTCATACGGCTATCAACAGGGGTTGGTTTATCCACCTTATGGGTATACAACGTATGGACCTGAATACGTCTACCCACAGAGTATGTACAATCCATATATGGGTCAGCACTACCTTCAGATATATGGAGTGCCTGCTGCAGTAAACACAACCATTTATCCCTATGGACAAGTGGGTCAGGCTATGCCTAGTGGACATGGGTATACAGCAATGCAAGGCTATACAATACCAGGCCATCAGATCGTGCCATATGGTGGATCTAATGTTAATGCCATGTCAACTTCACCTATGCCTGCCATTCAAACACCATATCCTAGCGGAATTGCTGCACCAGTTCCAGGCCAACCGCAATTTATTGTTCCTGCTCCTTCTCCACAGTTTATGCAAGGCAGTGGTCCTGACCAAACCGCTGGGTGA 858 0.4942 MAYQAIQGPSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYGRIRPASPYVGGLQPARGAFLGSFGYQQPVSYGYQQGLVYPPYGYTTYGPEYVYPQSMYNPYMGQHYLQIYGVPAAVNTTIYPYGQVGQAMPSGHGYTAMQGYTIPGHQIVPYGGSNVNAMSTSPMPAIQTPYPSGIAAPVPGQPQFIVPAPSPQFMQGSGPDQTAG 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03913 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Arst6g03913 285 SMART rrm1_1 33 105 IPR000504 GO:0003723
Arst6g03913 285 PANTHER BOULE-RELATED 10 248 - -
Arst6g03913 285 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 26 113 - -
Arst6g03913 285 Gene3D - 4 116 IPR012677 -
Arst6g03913 285 SUPERFAMILY RNA-binding domain, RBD 31 119 IPR035979 GO:0003676
Arst6g03913 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Arst6g03913 285 CDD RRM_RBM24_RBM38_like 32 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03913 Arst-Chr6 107399753 107405053 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03913 21 164 C2H2 Transcription Factor Family AT2G19380 33.548 1.67e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03913 - - gmx:100779244 519.62