Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03892 ATGGAAGGAGCAGTTAGAGTGAAGGAAGAAGAATCGGAACACTCACAACCTCAACCTCGGGAAGGGTTGAACGACGCGTCTCCACCTCCGTTTCTAACGAAGACGTTCGACATGGTGGATGACTCTTCCATTGATTCCATTGTTTCTTGGAGCATTACTCGCAACTCCTTTGTTGTTTGGGACCCTCACAGCTTCTCCACTACCATCTTGCCTCGCTACTTCAAGCATTCCAACTTCTCCAGCTTCATTCGCCAGCTCAACACATATGGATTTCGGAAAGTTGATCCTGATCGGTGGGAATTCGCTAACGAAGGTTTCTTGGCGGGACAGAAACACTTGTTGAAGACCATAAAGAGAAGAAGAAATGTATCTCAGGGAACACAGCAAAGAGGAGGTGGAGGTCCTTGTCTCGAGTTGGGGGAGTATGGATTGGAAGGTGAGGTTGAAAGGTTGAGGAGAGACCGGAATGTGTTGATGGCCGAAATCGTGAAGTTGAGGCAGCAACAGCATAATTCACGAAATGAGGTGCTTCTGATGGAGACAAGGTTGCAAGCCACAGAGAAGAAACAACAACAGATGATGACTTTCCTTGCCAAAGCTCTGAACAATCCATCTTTCATGCAGCATTTGGCTGATAAGAATTCCCAGAACACGCAATTGTTTGGCGTTGAAGTTAAAAGGAAGAGGAGACTAACAGCTAGCCCAAACGTGGATCCGGTGACAGCAGTAGCAGCAGTGCCTATTGAATCAGTAGTGGAGGACTATCCAAACCACGAACAAGAACTTGCAAATATCGAGTTCGAGATGGATACATTTTTCGCAACATCTTATGATACCGAGCCTAACGACGAAAATAATGACCCTGCATCAACAACTTCAGTATCCGGGGATACTATCTTGGAGGATTTTCTCAAGGAAGATTTGGTAACTGGGAACCCAAAGGATGAAGTTGTGATTGGTGATTGTTCAAGAACTGATATTCCTGCGGAGGATTTGGCAGCAACGCCTAAGGATTGGACTGAGGAATTGCAGGACCTTGTGAGTCATATGGAATATCTTGGTTCCAAACCTTAG 1074 0.4581 MEGAVRVKEEESEHSQPQPREGLNDASPPPFLTKTFDMVDDSSIDSIVSWSITRNSFVVWDPHSFSTTILPRYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLAGQKHLLKTIKRRRNVSQGTQQRGGGGPCLELGEYGLEGEVERLRRDRNVLMAEIVKLRQQQHNSRNEVLLMETRLQATEKKQQQMMTFLAKALNNPSFMQHLADKNSQNTQLFGVEVKRKRRLTASPNVDPVTAVAAVPIESVVEDYPNHEQELANIEFEMDTFFATSYDTEPNDENNDPASTTSVSGDTILEDFLKEDLVTGNPKDEVVIGDCSRTDIPAEDLAATPKDWTEELQDLVSHMEYLGSKP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03892 357 Gene3D - 23 121 IPR036388 -
Arst6g03892 357 Pfam HSF-type DNA-binding 31 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst6g03892 357 FunFam Heat shock transcription factor 1 24 121 - -
Arst6g03892 357 SUPERFAMILY "Winged helix" DNA-binding domain 27 120 IPR036390 -
Arst6g03892 357 SMART hsfneu3 27 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst6g03892 357 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 249 IPR027725 -
Arst6g03892 357 MobiDBLite consensus disorder prediction 1 18 - -
Arst6g03892 357 Coils Coil 148 168 - -
Arst6g03892 357 ProSitePatterns HSF-type DNA-binding domain signature. 70 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst6g03892 357 MobiDBLite consensus disorder prediction 1 30 - -
Arst6g03892 357 PRINTS Heat shock factor (HSF) domain signature 31 54 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst6g03892 357 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst6g03892 357 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03892 Arst-Chr6 107183186 107185984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03892 17 357 HSF AT2G26150 52.478 3.72e-126 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Arst6g03892 HSF_DNA-bind 1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03892 K09419 - gmx:100778558 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g03892 6 107183186 107185984 Arst8g01201 8 16476184 16478174 PCT