Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03862 ATGGAGGAAGAACCTGATACCTACAATCCTCGTACCGTTGAAGAGGTATTCCGTGATTTCAAGTCTCGCCGTACTGCTTTGATCAAAGCCCTCACCACTGATGCTGAAGAGTTCTTCAAGCAGTGTGATCCCGAAAAGGACAATCTTTGCCTGTATGGATTTCCTACCGAGGAGTGGGAAGTCAATCTGCCTGTTGAGGAGGTGCCTCCAGAGATTCCGGAGCCAACATTGGGTATTAACTTTGCCAGAGATGGGCTTGATAAACAGGAATGGCTATCTTTGGTTGCTGCTCATAGTGATGCTTGGATACTTGGTGTGGCTTTTTATTTTGGTGCTAGAGTTGGATTTGACAGGGCTGATAGGAAGAGACTATTTACTATGATAAATGATCTTCCAACAATATTTGAGGTTGTTACAGGAATGGGAAAGACACCGGCTTCTAATCATAGCAGTAACAAATCTAAATCAAACTCTAAGAAAGGTTCCGAGTCTAAGCCAAAGAATTCTAAGGCAACACAATCAAAGGACAAGGATGGTGAAGAACAGGGAGGAGACGTTCCTTGTGGGGCATGTGGAGAGAGCTATGACGACGGTTTCTGGATTTGCTGCGACATATGCGAGAAGTGGTTCCATGGAAAGTGTGTGAAGATTACCCCTGCAAGGGCTGAACACATCAAGCAGTACAAATGTCCATCTTGCAGCAACAAGAGAGCTAGACAGTAA 723 0.4481 MEEEPDTYNPRTVEEVFRDFKSRRTALIKALTTDAEEFFKQCDPEKDNLCLYGFPTEEWEVNLPVEEVPPEIPEPTLGINFARDGLDKQEWLSLVAAHSDAWILGVAFYFGARVGFDRADRKRLFTMINDLPTIFEVVTGMGKTPASNHSSNKSKSNSKKGSESKPKNSKATQSKDKDGEEQGGDVPCGACGESYDDGFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARQ 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03862 240 ProSiteProfiles Zinc finger PHD-type profile. 185 236 IPR019787 -
Arst6g03862 240 Pfam PHD-finger 188 236 IPR019787 -
Arst6g03862 240 SUPERFAMILY FYVE/PHD zinc finger 178 237 IPR011011 -
Arst6g03862 240 ProSitePatterns Zinc finger PHD-type signature. 188 233 IPR019786 -
Arst6g03862 240 FunFam PHD finger alfin-like protein 180 235 - -
Arst6g03862 240 MobiDBLite consensus disorder prediction 142 184 - -
Arst6g03862 240 Pfam Alfin 12 140 IPR021998 GO:0006355|GO:0042393
Arst6g03862 240 MobiDBLite consensus disorder prediction 156 183 - -
Arst6g03862 240 PANTHER CPG BINDING PROTEIN 9 240 IPR045104 GO:0006355|GO:0042393
Arst6g03862 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 235 IPR013083 -
Arst6g03862 240 SMART PHD_3 187 234 IPR001965 -
Arst6g03862 240 CDD PHD_AL_plant 187 236 IPR044104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03862 Arst-Chr6 106864705 106875568 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03862 1 239 Alfin-like Transcription Factor Family AT3G42790 69.200 1.02e-112 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Arst6g03862 Alfin 5.2e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03862 K26274 - rcu:8258558 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g03862 6 106864705 106875568 Arst6g03862 6 106864705 106875568 ECH