Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03727 ATGGCTTACCACAACCACAACCCTCTCTCTGTCTCTGACTCACACGACGACCTTCCTCTTCACCATTTCACCCACCAATCCAACACCTTCCCTTCCTCTCCTCCCCACCCTAACTCCAAACCTAACTCCGATCCTCTCCAAACCACCGCTCCCAGCTGGCTCAACAACGCACTCCTCCGAACCAACTTCACCGACACCACCAACACCACCGCCACTTCCAACGCTAATAACACCAACGCCAACTCCAATTTCCTCAATCTCCACACGGCCTCCGACTCCGCCGCATCCCAGCCATCTCCGTGGCTCGACGCTACCGGTGTCAACTTCGAACCGGTCGATTTGAAGACCGGAATTGCCAACGCCAAGGGGGACGTGACAGCCGCCGTGGTCGGAGATGGTGGCGGAGGTGACGGCGGAGGAGGAGGGATGGTGAATTGGCAGGTTGGAAGATGGAAGGCGGAGATACTGGCGCACCCTCTGTACGAACAGCTGCTGTCGGCACACGTGGCGTGCCTGAGGATCGCCACGCCGGTGGACCAGCTGCCTAGGATCGACGCACAGCTGGCACAGTCACAGAATGTAGTCTCCAAGTACTCTGCCTTCGGCCATGGCGTTGGAGATGACAAAGAACTCGACCAGTTCATGTCGCACTACGTTTTGCTTCTTTGCTCCTTCAAAGAACAATTGCAGCAGCATGTCCGCGTCCACGCAATGGAAGCAGTGATGGCTTGTTGGGAGATCGAGCAATCCTTACAAAGTTTAACAGGAGTTTCACCCGGAGAAGGTACAGGGGCTACAATGTCCGACGACGAAGATGATCAAGTTGATAGTGAGGCCAATCTGTTTGACGGTAGTTTGGATGGAACAGATAGCATGGGGTTTGGCCCTCTTATTCCGACAGAGAACGAGAGGTCTCTCATGGAGCGTGTAAGACAAGAATTAAAGCATGAATTGAAAAATGGTTATAAGGAGAAAATTGTTGACATAAGAGAAGAAATTTTGCGCAAGAGACGGGCAGGAAAACTTCCCGGCGACACGACCTCTGTCCTTAAAGCTTGGTGGCAATCCCATTCCAAATGGCCTTACCCAACAGAGGAAGATAAGGCAAGGCTGGTGCAGGAAACTGGTCTGCAATTAAAGCAGATTAATAATTGGTTTATCAATCAGAGGAAGAGGAATTGGCACAGCAATCCTTCTTCTTCTACTGTCTTGAAGAGCAAGCGCAAAAGGTGA 1233 0.5207 MAYHNHNPLSVSDSHDDLPLHHFTHQSNTFPSSPPHPNSKPNSDPLQTTAPSWLNNALLRTNFTDTTNTTATSNANNTNANSNFLNLHTASDSAASQPSPWLDATGVNFEPVDLKTGIANAKGDVTAAVVGDGGGGDGGGGGMVNWQVGRWKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVSKYSAFGHGVGDDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSEANLFDGSLDGTDSMGFGPLIPTENERSLMERVRQELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVLKSKRKR 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03727 410 FunFam homeobox protein knotted-1-like 3 isoform X1 334 395 - -
Arst6g03727 410 Pfam KNOX1 domain 152 192 IPR005540 GO:0003677|GO:0005634
Arst6g03727 410 Pfam ELK domain 313 334 IPR005539 GO:0003677
Arst6g03727 410 SMART ELK_2 313 334 IPR005539 GO:0003677
Arst6g03727 410 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 84 396 - -
Arst6g03727 410 Pfam Homeobox KN domain 353 392 IPR008422 GO:0003677|GO:0006355
Arst6g03727 410 Gene3D - 332 404 - -
Arst6g03727 410 CDD homeodomain 336 397 IPR001356 GO:0003677
Arst6g03727 410 SMART KNOX2_2 201 256 IPR005541 GO:0003677|GO:0005634
Arst6g03727 410 SMART HOX_1 335 400 IPR001356 GO:0003677
Arst6g03727 410 MobiDBLite consensus disorder prediction 1 50 - -
Arst6g03727 410 SMART KNOX1_2 149 193 IPR005540 GO:0003677|GO:0005634
Arst6g03727 410 ProSiteProfiles 'Homeobox' domain profile. 333 396 IPR001356 GO:0003677
Arst6g03727 410 Pfam KNOX2 domain 205 255 IPR005541 GO:0003677|GO:0005634
Arst6g03727 410 SUPERFAMILY Homeodomain-like 335 399 IPR009057 -
Arst6g03727 410 ProSiteProfiles ELK domain profile. 313 333 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03727 Arst-Chr6 105318243 105321771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03727 1 410 Homeobox Transcription Factor Family AT5G25220 65.618 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Arst6g03727 KNOX2 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03727 - - gmx:100812596 567.77