Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03615 ATGTCTCAAACTAACTGGGAGGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTTGTGAAGAGGGACTTGAAGGCTTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTATCCTCGGACCCCGTTGCTATCGATGCTCCCGGAGGATTTCTATTCGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCCAGGACTAATGAGAAGCACTCAGAGGTTGCCGCCTCGTATATTGAGACACAATTAATTAAGGCTAGGGAACAACAGCAGCAGCAACAGCAGCCGCAGCCACAACCCCAGCAGTCACAACATCAACATCAACAGCAGCAGCAGCAGCAACAACACCACATGCAGATGCAACAGCTCCTGTTGCAGAGGCAGGCCCAGCAGCAGCAGCAACAACAACAACAACAGCAGCAGCAGCAGCCGCAGCAACAGCAGCAACAACAGCAGCCACAGCAGCAGCAACAGCAGCAACCACCCCAACAACAACAGGGTAGGGATAGGGCTCATCTCTTGAATGGGGGTACCAATGGGTTAGTTGGAAACCCTGGCACTGCTAATGCAATGGCAACAAAGATGATCGAGGACAGGTTAAAACTGCCCCTTCAGAGGGATTCTTTGGATGAAGCAGCAATGAAGCAAAGATTCGGAGACCAACTCATGGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTCCGGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTGCTGGTGCGATGTCTCCACAAGTTCAAGGTCGAAGTCAGCAATTACCAGGGTCTACTCCGGACATTAAGAGTGAGATTAATCCTGTTTTAAATCCCAGAGCTGCGGGGCCTGAAGGATCACTAATAGGAATGCCTGGATCAAATCAAGGCAGCAACAATTTGACTTTGAAGGGGTGGCCACTCACAGGGTTGGAGCAATTACGGTCTGGTCTACTTCAGCAGCAAAAACCTTTCATGCAAGCCCCACAGCCTTTTCATCAGCTTCCAATGTTGACACCCCAGCATCAGCAACATCTTATGTTACAAGCACAACAAAATCTGGCATCACCATCTGCTAGTGATGATAGTAGAAGACTCAGAATGCTGATGAATAATAGGAACATGGGGTTAAGTAAGGATGGTCTTTCAAATCCGGTGGGGGATGTACCAAATGTTGGATCACCACTTCCAGGTGGTGGTCCCCCGTTTCCTCGTGGAGATACAGATATGTTAATGAAGTTGAGACTCGCTCAGTTACACCAGCAGCATCAAAATGCCAATCCACAGCAGCAGCAGCAGCTTCAACAGCATGCTCTTTCAAATCAGCAATCCCAGAGTTCAAATCATGGCATGCATCAACAAGACAGAGTAGCAGGAGCTGGCAGTGTCACTGCGGATGGAAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCAAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCTGGACCTGCCAATAGCTCAGGAACAGCAAATACGGCAGGCCCATCTCCAAGTTCAGCGCCATCAACTCCCTCCACTCATACACCTGGTGATGTGATGTCAATGCCTGCATTACCTCATAGTAGTAGTTCAACAAAGCCTCTAATGATGTTTGGTACCGATGGCACCGGAACTCTTACATCACCCTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGACGTGGATCGTTTTGTGGAGGATGGATCTCTTGATGACAATGTTGAGTCTTTTTTATCCCATGATGATACAGATGCTAGAGATGCAGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAGTAAACTCAGTACGTGCAAGCACAAGCAAGGTCGTCTGTTGCCATTTCTCATCTGATGGGAAATTGCTTGCAAGTGGTGGACATGACAAGAAGGCTGTTTTATGGTACACAGATTCTCTGAAGCAGAAAACTACCCTTGAAGAGCATTCATCGTTAATCACTGATGTCCGGTTTAGCCCAAGCATGCCTCGCCTTGCAACATCTTCATTTGACAAAACTGTCAGAGTTTGGGATGTTGACAATCCGGGGTATTCTCTTCGCACCTTTACTGGACATTCAACATCAGTTATGTCTCTAGATTTTCACCCGAATAAGGATGACCTTATCTGCTCTTGTGATGGTGACGGTGAGATACGATATTGGAGCATAAACAATGGCAGTTGTGCTAGAGTTGCAAAGGGTGGGACTGTGCAGATGAGATTTCAACCTCGACTCGGGAGGTACCTTGCTGCGGCTGCAGAGAATGTCGTATCTATACTTGATGTGGAGACACAAGCATGCCCATATTCGTTAAAGGGACACACGAAGCCGATACATTCCGTGTGTTGGGACCCATCTGGGGAGTTCCTTGCATCTGTCAGTGAGGACTCTGTAAGGGTTTGGACTCTTGGAACAGGAACTGAGGGCGAATGTGTTCACGAGCTTAGCTGTAACGGCAACAAGTTCCACTCGTGTGTTTTCCACCCAACGTATTCTTCGCTGCTCGTCATTGGTTGTTATCAGTCGTTGGAGCTGTGGAACATGTCAGAGAACAAGACAATGACTCTGTCTGCTCATGAAGGTCTGGTCGCCGCGTTGGCAGTTTCAACTGTAAATGGTTTGGTTGCTTCAGCGAGTCATGACAAGTATGTCAAGCTCTGGAAATAA 2712 0.4742 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQPQPQPQQSQHQHQQQQQQQQHHMQMQQLLLQRQAQQQQQQQQQQQQQQPQQQQQQQQPQQQQQQQPPQQQQGRDRAHLLNGGTNGLVGNPGTANAMATKMIEDRLKLPLQRDSLDEAAMKQRFGDQLMDPNHASILKSSAAPGQPSGQVLHGAAGAMSPQVQGRSQQLPGSTPDIKSEINPVLNPRAAGPEGSLIGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLPMLTPQHQQHLMLQAQQNLASPSASDDSRRLRMLMNNRNMGLSKDGLSNPVGDVPNVGSPLPGGGPPFPRGDTDMLMKLRLAQLHQQHQNANPQQQQQLQQHALSNQQSQSSNHGMHQQDRVAGAGSVTADGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPALPHSSSSTKPLMMFGTDGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDDNVESFLSHDDTDARDAVGRCMDVSKGFTFSEVNSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWYTDSLKQKTTLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVAKGGTVQMRFQPRLGRYLAAAAENVVSILDVETQACPYSLKGHTKPIHSVCWDPSGEFLASVSEDSVRVWTLGTGTEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMSENKTMTLSAHEGLVAALAVSTVNGLVASASHDKYVKLWK 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03615 903 CDD WD40 615 903 - -
Arst6g03615 903 MobiDBLite consensus disorder prediction 146 172 - -
Arst6g03615 903 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 871 903 - -
Arst6g03615 903 Coils Coil 120 140 - -
Arst6g03615 903 MobiDBLite consensus disorder prediction 422 454 - -
Arst6g03615 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 871 903 IPR001680 GO:0005515
Arst6g03615 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 619 660 IPR001680 GO:0005515
Arst6g03615 903 SUPERFAMILY WD40 repeat-like 613 903 IPR036322 GO:0005515
Arst6g03615 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 661 696 IPR001680 GO:0005515
Arst6g03615 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 786 818 IPR001680 GO:0005515
Arst6g03615 903 Pfam LisH 10 36 IPR006594 GO:0005515
Arst6g03615 903 MobiDBLite consensus disorder prediction 422 541 - -
Arst6g03615 903 Pfam WD domain, G-beta repeat 658 693 IPR001680 GO:0005515
Arst6g03615 903 Pfam WD domain, G-beta repeat 782 816 IPR001680 GO:0005515
Arst6g03615 903 Pfam WD domain, G-beta repeat 866 903 IPR001680 GO:0005515
Arst6g03615 903 Pfam WD domain, G-beta repeat 700 737 IPR001680 GO:0005515
Arst6g03615 903 Pfam WD domain, G-beta repeat 619 650 IPR001680 GO:0005515
Arst6g03615 903 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 661 696 - -
Arst6g03615 903 SMART Lish 8 40 IPR006594 GO:0005515
Arst6g03615 903 FunFam Transcriptional corepressor LEUNIG 750 903 - -
Arst6g03615 903 Gene3D - 595 749 IPR015943 GO:0005515
Arst6g03615 903 Gene3D - 750 903 IPR015943 GO:0005515
Arst6g03615 903 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 903 - -
Arst6g03615 903 MobiDBLite consensus disorder prediction 376 409 - -
Arst6g03615 903 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 903 - -
Arst6g03615 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 704 746 IPR001680 GO:0005515
Arst6g03615 903 FunFam Transcriptional corepressor LEUNIG 598 749 - -
Arst6g03615 903 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Arst6g03615 903 MobiDBLite consensus disorder prediction 146 188 - -
Arst6g03615 903 ProSitePatterns Trp-Asp (WD) repeats signature. 680 694 IPR019775 -
Arst6g03615 903 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 704 742 - -
Arst6g03615 903 SMART WD40_4 779 817 IPR001680 GO:0005515
Arst6g03615 903 SMART WD40_4 612 651 IPR001680 GO:0005515
Arst6g03615 903 SMART WD40_4 654 693 IPR001680 GO:0005515
Arst6g03615 903 SMART WD40_4 823 862 IPR001680 GO:0005515
Arst6g03615 903 SMART WD40_4 864 903 IPR001680 GO:0005515
Arst6g03615 903 SMART WD40_4 697 737 IPR001680 GO:0005515
Arst6g03615 903 MobiDBLite consensus disorder prediction 465 525 - -
Arst6g03615 903 MobiDBLite consensus disorder prediction 234 267 - -
Arst6g03615 903 MobiDBLite consensus disorder prediction 87 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03615 Arst-Chr6 103973168 103983114 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03615 664 863 Miscellaneous Gene Families AT5G08390 26.570 4.05e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Arst6g03615 WD40 0.033 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03615 - - aip:107605121 1385.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g03615 6 103973168 103983114 Arst8g03411 8 44951253 44958493 PCT