Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03613 ATGTCTCAAACTAACTGGGAGGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTTGTGAAGAGGGACTTGAAGGCTTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTATCCTCGGACCCCGTTGCTATCGATGCTCCCGGAGGATTTCTATTCGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCCAGGACTAATGAGAAGCACTCAGAGGTTGCCGCCTCGTATATTGAGACACAATTAATTAAGGCTAGGGAACAACAGCAGCAGCAACAGCAGCCGCAGCCACAACCCCAGCAGTCACAACATCAACATCAACAGCAGCAGCAGCAGCAACAACACCACATGCAGATGCAACAGCTCCTGTTGCAGAGGCAGGCCCAGCAGCAGCAGCAACAACAACAACAACAGCAGCAGCAGCAGCCGCAGCAACAGCAGCAACAACAGCAGCCACAGCAGCAGCAACAGCAGCAACCACCCCAACAACAACAGGGTAGGGATAGGGCTCATCTCTTGAATGGGGGTACCAATGGGTTAGTTGGAAACCCTGGCACTGCTAATGCAATGGCAACAAAGATGATCGAGGACAGGTTAAAACTGCCCCTTCAGAGGGATTCTTTGGATGAAGCAGCAATGAAGCAAAGATTCGGAGACCAACTCATGGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTCCGGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTGCTGGTGCGATGTCTCCACAAGTTCAAGGTCGAAGTCAGCAATTACCAGGGTCTACTCCGGACATTAAGAGTGAGATTAATCCTGTTTTAAATCCCAGAGCTGCGGGGCCTGAAGGATCACTAATAGGAATGCCTGGATCAAATCAAGGCAGCAACAATTTGACTTTGAAGGGGTGGCCACTCACAGGGTTGGAGCAATTACGGTCTGGTCTACTTCAGCAGCAAAAACCTTTCATGCAAGCCCCACAGCCTTTTCATCAGCTTCCAATGTTGACACCCCAGCATCAGCAACATCTTATGTTACAAGCACAACAAAATCTGGCATCACCATCTGCTAGTGATGATAGTAGAAGACTCAGAATGCTGATGAATAATAGGAACATGGGGTTAAGTAAGGATGGTCTTTCAAATCCGGTGGGGGATGTACCAAATGTTGGATCACCACTTCCAGGTGGTGGTCCCCCGTTTCCTCGTGGAGATACAGATATGTTAATGAAGTTGAGACTCGCTCAGTTACACCAGCAGCATCAAAATGCCAATCCACAGCAGCAGCAGCAGCTTCAACAGCATGCTCTTTCAAATCAGCAATCCCAGAGTTCAAATCATGGCATGCATCAACAAGACAGAGTAGCAGGAGCTGGCAGTGTCACTGCGGATGGAAGCATGTCAAACTCCTTTAGAGGAAATGATCAGACTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCTGGACCTGCCAATAGCTCAGGAACAGCAAATACGGCAGGCCCATCTCCAAGTTCAGCGCCATCAACTCCCTCCACTCATACACCTGGTGATGTGATGTCAATGCCTGCATTACCTCATAGTAGTAGTTCAACAAAGCCTCTAATGATGTTTGGTACCGATGGCACCGGAACTCTTACATCACCCTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGACGTGGATCGTTTTGTGGAGGATGGATCTCTTGATGACAATGTTGAGTCTTTTTTATCCCATGATGATACAGATGCTAGAGATGCAGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAGTAAACTCAGTACGTGCAAGCACAAGCAAGGTCGTCTGTTGCCATTTCTCATCTGATGGGAAATTGCTTGCAAGTGGTGGACATGACAAGAAGGCTGTTTTATGGTACACAGATTCTCTGAAGCAGAAAACTACCCTTGAAGAGCATTCATCGTTAATCACTGATGTCCGGTTTAGCCCAAGCATGCCTCGCCTTGCAACATCTTCATTTGACAAAACTGTCAGAGTTTGGGATGTTGACAATCCGGGGTATTCTCTTCGCACCTTTACTGGACATTCAACATCAGTTATGTCTCTAGATTTTCACCCGAATAAGGATGACCTTATCTGCTCTTGTGATGGTGACGGTGAGATACGATATTGGAGCATAAACAATGGCAGTTGTGCTAGAGTTGCAAAGGGTGGGACTGTGCAGATGAGATTTCAACCTCGACTCGGGAGGTACCTTGCTGCGGCTGCAGAGAATGTCGTATCTATACTTGATGTGGAGACACAAGCATGCCCATATTCGTTAAAGGGACACACGAAGCCGATACATTCCGTGTGTTGGGACCCATCTGGGGAGTTCCTTGCATCTGTCAGTGAGGACTCTGTAAGGGTTTGGACTCTTGGAACAGGAACTGAGGGCGAATGTGTTCACGAGCTTAGCTGTAACGGCAACAAGTTCCACTCGTGTGTTTTCCACCCAACGTATTCTTCGCTGCTCGTCATTGGTTGTTATCAGTCGTTGGAGCTGTGGAACATGTCAGAGAACAAGACAATGACTCTGTCTGCTCATGAAGGTCTGGTCGCCGCGTTGGCAGTTTCAACTGTAAATGGTTTGGTTGCTTCAGCGAGTCATGACAAGTATGTCAAGCTCTGGAAATAA 2697 0.475 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQPQPQPQQSQHQHQQQQQQQQHHMQMQQLLLQRQAQQQQQQQQQQQQQQPQQQQQQQQPQQQQQQQPPQQQQGRDRAHLLNGGTNGLVGNPGTANAMATKMIEDRLKLPLQRDSLDEAAMKQRFGDQLMDPNHASILKSSAAPGQPSGQVLHGAAGAMSPQVQGRSQQLPGSTPDIKSEINPVLNPRAAGPEGSLIGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLPMLTPQHQQHLMLQAQQNLASPSASDDSRRLRMLMNNRNMGLSKDGLSNPVGDVPNVGSPLPGGGPPFPRGDTDMLMKLRLAQLHQQHQNANPQQQQQLQQHALSNQQSQSSNHGMHQQDRVAGAGSVTADGSMSNSFRGNDQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPALPHSSSSTKPLMMFGTDGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDDNVESFLSHDDTDARDAVGRCMDVSKGFTFSEVNSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWYTDSLKQKTTLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVAKGGTVQMRFQPRLGRYLAAAAENVVSILDVETQACPYSLKGHTKPIHSVCWDPSGEFLASVSEDSVRVWTLGTGTEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMSENKTMTLSAHEGLVAALAVSTVNGLVASASHDKYVKLWK 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03613 898 Pfam WD domain, G-beta repeat 653 688 IPR001680 GO:0005515
Arst6g03613 898 Pfam WD domain, G-beta repeat 614 645 IPR001680 GO:0005515
Arst6g03613 898 Pfam WD domain, G-beta repeat 695 732 IPR001680 GO:0005515
Arst6g03613 898 Pfam WD domain, G-beta repeat 861 898 IPR001680 GO:0005515
Arst6g03613 898 Pfam WD domain, G-beta repeat 777 811 IPR001680 GO:0005515
Arst6g03613 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 699 741 IPR001680 GO:0005515
Arst6g03613 898 MobiDBLite consensus disorder prediction 146 172 - -
Arst6g03613 898 FunFam Transcriptional corepressor LEUNIG 745 898 - -
Arst6g03613 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 656 691 IPR001680 GO:0005515
Arst6g03613 898 CDD WD40 610 898 - -
Arst6g03613 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 866 898 IPR001680 GO:0005515
Arst6g03613 898 Coils Coil 120 140 - -
Arst6g03613 898 MobiDBLite consensus disorder prediction 422 454 - -
Arst6g03613 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 614 655 IPR001680 GO:0005515
Arst6g03613 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 699 737 - -
Arst6g03613 898 FunFam Transcriptional corepressor LEUNIG 593 744 - -
Arst6g03613 898 Gene3D - 590 744 IPR015943 GO:0005515
Arst6g03613 898 Gene3D - 745 898 IPR015943 GO:0005515
Arst6g03613 898 SUPERFAMILY WD40 repeat-like 608 898 IPR036322 GO:0005515
Arst6g03613 898 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 898 - -
Arst6g03613 898 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 898 - -
Arst6g03613 898 SMART Lish 8 40 IPR006594 GO:0005515
Arst6g03613 898 ProSitePatterns Trp-Asp (WD) repeats signature. 675 689 IPR019775 -
Arst6g03613 898 SMART WD40_4 859 898 IPR001680 GO:0005515
Arst6g03613 898 SMART WD40_4 607 646 IPR001680 GO:0005515
Arst6g03613 898 SMART WD40_4 692 732 IPR001680 GO:0005515
Arst6g03613 898 SMART WD40_4 774 812 IPR001680 GO:0005515
Arst6g03613 898 SMART WD40_4 649 688 IPR001680 GO:0005515
Arst6g03613 898 SMART WD40_4 818 857 IPR001680 GO:0005515
Arst6g03613 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 656 691 - -
Arst6g03613 898 MobiDBLite consensus disorder prediction 376 409 - -
Arst6g03613 898 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Arst6g03613 898 MobiDBLite consensus disorder prediction 146 188 - -
Arst6g03613 898 Pfam LisH 10 36 IPR006594 GO:0005515
Arst6g03613 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 866 898 - -
Arst6g03613 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 781 813 IPR001680 GO:0005515
Arst6g03613 898 MobiDBLite consensus disorder prediction 465 520 - -
Arst6g03613 898 MobiDBLite consensus disorder prediction 422 537 - -
Arst6g03613 898 MobiDBLite consensus disorder prediction 234 267 - -
Arst6g03613 898 MobiDBLite consensus disorder prediction 87 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03613 Arst-Chr6 103973168 103983115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03613 659 858 Miscellaneous Gene Families AT5G08390 26.570 4.09e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Arst6g03613 WD40 0.032 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03613 - - aip:107605121 1370.14