Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03425 ATGGATTTGGACAGCATTGAGTGTGTGTCATCCTCTGATGGCATGGATGAAGATGAGATCCAACACCATAACCTTCATCTTCATCATCACTCTGAGTTTTCATCTTCGAAGCCTCGCAATGGAGGCGCCAACAACAACAACTTCAACAACAACAACAACAACAGCAACAACAATGTTATGGGCGCAACGGTGGTTATTCCTCCTGCAACCAGCGTCCATGAGTTGCTTGAATGTCCCGTTTGCACCAATTCAATGTATCCCCCAATTCATCAGTGCCATAATGGGCATACATTGTGTTCCACATGTAAAACAAGGGTGCACAATCGGTGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTGGAAAAGGTGGCTGAATCGCTCGAGTTACCTTGCAAGTACTACTCCCTCGGATGTCCAGAAATATTTCCATACTACAGCAAGCTGAAGCATGAGACAGTATGCAATTTCAGACCATACAATTGTCCTTATGCTGGATCAGAGTGTTCTATTGTCGGGGACATTCCTTTCCTTGTTGCACATCTGAGGGATGATCACAAGGTGGACATGCACACAGGATGCACATTCAACCACCGCTATGTAAAATCAAATCCCCGTGAAGTTGAGAATGCAACATGGATGCTCACGGTATTTCATTGTTTTGGACAATACTTCTGTCTCCACTTTGAAGCATTCCAGCTAGGCATGGCCCCGGTTTACATGGCATTCCTTCGTTTCATGGGGGACGAGAATGAGGCTCGGAACTATAGCTATAGCCTTGAGGTCGGGGCAAATGGCAGGAAACTCATTTGGGAGGGTACTCCACGAAGTATCCGGGATAGCCACCGGAAAGTCAGGGATAGCCATGATGGTCTGATCATTCAACGAAATATGGCCTTATTTTTCTCTGGTGGAGATAGGAAGGAACTGAAACTAAGAGTTACAGGAAGAATATGGAAGGAACAACAGAATCCAGATGCCGGAGTGTGCATACCAAATCTTTGTAGCTGA 1023 0.4575 MDLDSIECVSSSDGMDEDEIQHHNLHLHHHSEFSSSKPRNGGANNNNFNNNNNNSNNNVMGATVVIPPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYNCPYAGSECSIVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03425 340 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 51 325 - -
Arst6g03425 340 SUPERFAMILY TRAF domain-like 131 323 - -
Arst6g03425 340 CDD RING-HC_SIAHs 76 114 - -
Arst6g03425 340 MobiDBLite consensus disorder prediction 28 56 - -
Arst6g03425 340 FunFam E3 ubiquitin-protein ligase SINAT5-like 187 319 - -
Arst6g03425 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 130 IPR013083 -
Arst6g03425 340 CDD Sina 192 320 - -
Arst6g03425 340 SUPERFAMILY RING/U-box 67 120 - -
Arst6g03425 340 FunFam E3 ubiquitin-protein ligase SINAT3 130 186 - -
Arst6g03425 340 MobiDBLite consensus disorder prediction 36 56 - -
Arst6g03425 340 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 185 319 IPR008974 GO:0005515
Arst6g03425 340 FunFam E3 ubiquitin-protein ligase SINAT3 11 129 - -
Arst6g03425 340 Pfam Seven in absentia protein family 120 319 IPR018121 GO:0005737|GO:0006511|GO:0007275
Arst6g03425 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 184 IPR013083 -
Arst6g03425 340 ProSiteProfiles Zinc finger RING-type profile. 78 114 IPR001841 -
Arst6g03425 340 ProSiteProfiles Zinc finger SIAH-type profile. 131 191 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03425 Arst-Chr6 101914810 101918750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03425 52 326 C3H Transcription Factor Family AT2G41980 76.727 9.18e-163 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03425 K04506 - qsa:O6P43_015002 648.662