Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03405 ATGTCACTCAAGCGAAGAAGGACCCACGCTCCCAAGCCCGCCCTAGACTACGACGTCATCTGCGAGCATTGCTCCTCCGGCGACTCCCCGGCGGAGCTTCTCCTCTGCGACAAATGCGATCGAGGCTACCACCTCTTCTGTCTCCGACCTATCCTTCCTTCCGTTCCCAAAGGCTCTTGGCTCTGCCCCTCTTGTTCCCACAGTGACACCAAGAAACCAAAATCATTTCCACTTGTTCAGACCAAAATCATTGACTTCTTTAGAATTAAACGGTCTTCGGAGGAAACCTTAACTTCAATTCAAGATGTTCGGAAGAAGCGGAAGCGGGGAAGCAGCGTGGCTTTGTTGAAGAAGAAGAAGAGGAAGCTTCTTCCGTTCGTTCCCACCGAGGATCCTAAGAGAAGGTTAGAGCAGATGGCATCGCTGGCTACAGCACTGATGGCGACAAAAGCGGTGTTCAGCAATGAGCTTACTTACATTCCTGGTATGGCGCCAAGATCTGCTAATTGTCCTGCTTTGGAGAGTGGTGGGATGCAGGTCTTATCAAAAGAAGACACAGACACTTTAAACTTGTGCAGAACTATGATGAAAAGAGGAGAATGCCCACCCCTCATGGTTGTTTTTGATCCTCTAGAAGGGTTCACTGTTGAGGCAGATAGATTCATAAGAGATTTAACCATAATCACAGAATATGTTGGAGACGTGGACTTTTTAAAGAATAGGGAAAATGATGATGGGGATAGCATGATGACACTTCTTTCTGCTTCTAATCCCTCCCAAACGCTTGTCATCTGTCCAGATAAACGAAGCAATATAGCACGCTTCATCAATGGCATAAACAACCACACACCGGAAGGGAAAAAGAAGCAGAACCTGAAGTGTGTGAGATTTGATGTCAATGGTGAATGCCGGGTTCTTTTAATTGCTAACAGAGATATATCAAAAGGGGAGAGACTGTACTATGACTACAATGGATACGAACATGAATATCCAACTGAACATTTTGTCTAA 1011 0.459 MSLKRRRTHAPKPALDYDVICEHCSSGDSPAELLLCDKCDRGYHLFCLRPILPSVPKGSWLCPSCSHSDTKKPKSFPLVQTKIIDFFRIKRSSEETLTSIQDVRKKRKRGSSVALLKKKKRKLLPFVPTEDPKRRLEQMASLATALMATKAVFSNELTYIPGMAPRSANCPALESGGMQVLSKEDTDTLNLCRTMMKRGECPPLMVVFDPLEGFTVEADRFIRDLTIITEYVGDVDFLKNRENDDGDSMMTLLSASNPSQTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVNGECRVLLIANRDISKGERLYYDYNGYEHEYPTEHFV 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03405 336 CDD PHD_RSF1 21 65 - -
Arst6g03405 336 SMART PHD_3 20 66 IPR001965 -
Arst6g03405 336 ProSitePatterns Zinc finger PHD-type signature. 21 65 IPR019786 -
Arst6g03405 336 ProSiteProfiles SET domain profile. 202 324 IPR001214 GO:0005515
Arst6g03405 336 ProSiteProfiles Zinc finger PHD-type profile. 18 68 IPR019787 -
Arst6g03405 336 Gene3D SET domain 106 336 IPR046341 -
Arst6g03405 336 Pfam PHD-finger 20 67 IPR019787 -
Arst6g03405 336 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 95 334 - -
Arst6g03405 336 FunFam Histone-lysine N-methyltransferase ATXR5 106 336 - -
Arst6g03405 336 SUPERFAMILY SET domain 192 324 IPR046341 -
Arst6g03405 336 Pfam SET domain 42 324 IPR001214 GO:0005515
Arst6g03405 336 CDD SET_ATXR5_6-like 199 336 - -
Arst6g03405 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 84 IPR013083 -
Arst6g03405 336 SUPERFAMILY FYVE/PHD zinc finger 13 73 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03405 Arst-Chr6 101694998 101699487 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03405 10 84 C2H2 Transcription Factor Family AT3G01460 31.579 1.34e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Arst6g03405 SET 1.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03405 K24406 - gmx:100775247 549.666