Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03404 ATGTCACTCAAGCGAAGAAGGACCCACGCTCCCAAGCCCGCCCTAGACTACGACGTCATCTGCGAGCATTGCTCCTCCGGCGACTCCCCGGCGGAGCTTCTCCTCTGCGACAAATGCGATCGAGGCTACCACCTCTTCTGTCTCCGACCTATCCTTCCTTCCGTTCCCAAAGGCTCTTGGCTCTGCCCCTCTTGTTCCCACAGTGACACCAAGAAACCAAAATCATTTCCACTTGTTCAGACCAAAATCATTGACTTCTTTAGAATTAAACGGTCTTCGGAGGAAACCTTAACTTCAATTCAAGATGTTCGGAAGAAGCGGAAGCGGGGAAGCAGCGTGGCTTTGTTGAAGAAGAAGAAGAGGAAGCTTCTTCCGTTCGTTCCCACCGAGGATCCTAAGAGAAGGTTAGAGCAGATGGCATCGCTGGCTACAGCACTGATGGCGACAAAAGCGGTGTTCAGCAATGAGCTTACTTACATTCCTGGTATGGCGCCAAGATCTGCTAATTGTCCTGCTTTGGAGAGTGGTGGGATGCAGGTCTTATCAAAAGAAGACACAGACACTTTAAACTTGTGCAGAACTATGATGAAAAGAGGAGAATGCCCACCCCTCATGGTTGTTTTTGATCCTCTAGAAGGATTCTGTTTGCGCAGGTTCACTGTTGAGGCAGATAGATTCATAAGAGATTTAACCATAATCACAGAATATGTTGGAGACGTGGACTTTTTAAAGAATAGGGAAAATGATGATGGGGATAGCATGATGACACTTCTTTCTGCTTCTAATCCCTCCCAAACGCTTGTCATCTGTCCAGATAAACGAAGCAATATAGCACGCTTCATCAATGGCATAAACAACCACACACCGGAAGGGAAAAAGAAGCAGAACCTGAAGTGTGTGAGATTTGATGTCAATGGTGAATGCCGGGTTCTTTTAATTGCTAACAGAGATATATCAAAAGGGGAGAGACTGTACTATGACTACAATGGATACGAACATGAATATCCAACTGAACATTTTGTCTAA 1026 0.4591 MSLKRRRTHAPKPALDYDVICEHCSSGDSPAELLLCDKCDRGYHLFCLRPILPSVPKGSWLCPSCSHSDTKKPKSFPLVQTKIIDFFRIKRSSEETLTSIQDVRKKRKRGSSVALLKKKKRKLLPFVPTEDPKRRLEQMASLATALMATKAVFSNELTYIPGMAPRSANCPALESGGMQVLSKEDTDTLNLCRTMMKRGECPPLMVVFDPLEGFCLRRFTVEADRFIRDLTIITEYVGDVDFLKNRENDDGDSMMTLLSASNPSQTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVNGECRVLLIANRDISKGERLYYDYNGYEHEYPTEHFV 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03404 341 CDD PHD_RSF1 21 65 - -
Arst6g03404 341 SMART PHD_3 20 66 IPR001965 -
Arst6g03404 341 ProSitePatterns Zinc finger PHD-type signature. 21 65 IPR019786 -
Arst6g03404 341 Gene3D SET domain 106 341 IPR046341 -
Arst6g03404 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 84 IPR013083 -
Arst6g03404 341 FunFam Histone-lysine N-methyltransferase ATXR5 106 341 - -
Arst6g03404 341 ProSiteProfiles Zinc finger PHD-type profile. 18 68 IPR019787 -
Arst6g03404 341 SUPERFAMILY FYVE/PHD zinc finger 13 73 IPR011011 -
Arst6g03404 341 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 95 339 - -
Arst6g03404 341 Pfam SET domain 42 329 IPR001214 GO:0005515
Arst6g03404 341 CDD SET_ATXR5_6-like 199 341 - -
Arst6g03404 341 SUPERFAMILY SET domain 192 329 IPR046341 -
Arst6g03404 341 ProSiteProfiles SET domain profile. 202 329 IPR001214 GO:0005515
Arst6g03404 341 Pfam PHD-finger 20 67 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03404 Arst-Chr6 101694998 101699487 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03404 10 84 C2H2 Transcription Factor Family AT3G01460 31.579 1.61e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Arst6g03404 SET 2.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03404 K24406 - gmx:100775247 543.502