Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03378 ATGAGAACTCAGCCAGACAAGTTTGTTAGGTTTCAGGACTGGAATTCAGACAAGGGTTCTGAGAGCAATTATCCTGTGATCAACATTGCACCTTCGCAGAGATTCAAAACTACATTAAATTCTATATCTGCAAAGTTTCAAAGGGGATTGGAATATGGTTTTCAAAGGATAAAGAGATTCAGTTTATCATTCAAGTCCTTTCTGTTCAGCCGTGCTTTTTCTAGTAACTTTAGTTCTAGAAAGAAAATCCTTGATCCACAGGGTCCGTTCCTTCAAAAATGGAACAAGATATTTGTATTGCTATGTGTTATTGCAGTATCACTGGATCCTTTGTTCTTTTATGTCCCTGTGATCGATGATGAGAAGAAATGTCTTTCACTGGACAACAAGATGGAGATTACAGCAACTGTTTTAAGAACTTTCTCCGATATCTTTTATATAGTCCACATGATTTTCCAGTTTCGTACTGGATTCATTGCTCCATCTTCTCGAGTGTTTGGAAGAGGTGTTTTGGTTGAGGATTCTTGGGCAATAGCAAAGCGATATCTAACATCTTATTTCTTAGTTGACATTCTTTCTGTTCTTCCCCTTCCACAGGTGGTGATTCTAATAGTCATTCCAGGGATGAGTGGCTACAAATCGCTGAATACAAAGAACTTGCTGAAATTTATTGTTTTCTTCCAATATATACCTCGAGTTTTTCGAATAATTCCATTATATAAAGAAGTTACAAGAACCTCTGGCATTCTCACTGAAACAGCTTGGGCTGGTGCTGTATTTAATCTCTTTCTTTACATGCTTGCAAGTCATGTTGTTGGTGCCTTTTGGTACTTGTTTTCTATAGAACGGGAAACCACATGCTGGCAAAAAGCCTGCACCCGAAGTAATGCAACATGTAATAAGGAGGACATGTATTGCAACAATCATCAAGGAGGGTTAAGCACAATTTCAACGTTTCTCAATGCTTCTTGCCCAATAAAGGAGACAAACACGACACTTTTTGATTTTGGGATATTCCTTGATGCCCTTCAATCTGGTGTTGTGGAGTCAAGAGACTTTCCACAAAAGTTCTTTTATTGTTTTTGGTGGGGCCTAAAAAGTTTGAGTTCTCTTGGTCAAAACCTGACGACAAGTACCTTTGTGTGGGAAATCTGCTTTGCAGTTTTCATTTCCATCGCTGGGTTGGTATTATTTTCATTCCTTATCGGGAATATGCAGACATATTTGCAATCAACAACAACAAGATTAGAGGAGATGAGGGTGAAAAGGAGAGATGCAGAACAGTGGATGTCTCATAGACTCCTCCCTGACAGCCTTAGGCAGCGAATCAGACGATATGAGCAGTACAAATGGCAAGAAACCAGAGGTGTTGATGAGGATAACTTGATTTGCAATCTTCCAAAGGATTTGAGAAGGGACATTAAGCGCCATCTTTGCTTGGCTTTGCTGATGAGAGTGCCAATGTTTGAGAAAATGGATGAACAACTTTTGGATGCCATGTGTGATCGTCTTAAGCCAGTGCTTTACACGGAAGAAAGCTATATTGTCCGGGAAGGAGACCCTGTCGATGAGATGCTTTTCATAATGCGAGGCAGGTTATTGACAATGACAACCAACGGAGGAAGAACAGGCTTCTTTAATTCCGAGTATCTTAAAGCCGGTGACTTTTGCGGAGAAGAGCTTCTCACATGGGCTTTAGATCCTCATTCTTCATCCAACCTCCCCATCTCAACCAGGACTGTCCAAACACTTTCAGAAGTGGAAGCTTTCGCTCTAAAAGCCGATGACTTGAAGTTTGTGGCTTCTCAATTTAGGCGTCTTCACAGCAAGCAGCTACGCCACACTTTCCGGTTCTACTCGCAACAGTGGCGCACATGGGCCGCATGTTTCATTCAAGCGGCCTGGCGTCGCTATGCTAAAAAGAAGCTTGAAGAGTCTCTCGTTGAAGAAGAGAATAGGCTGAAAGATGCATTGGCAAAGGTAGGTGGTAGCTCACCAAGTCTAGGTGCCACCATATATGCCTCCAGGTTTGCTGCCAATGCACTTAGATTGTTGCGGCGTAACCGCACAAGGAAGACAAGGATGCCGGAGAGAATACCCCCCATGCTGCTTCAGAAGCCTGCGGAACCTGATTTTACTGATGAAGAGCAGTAA 2154 0.4201 MRTQPDKFVRFQDWNSDKGSESNYPVINIAPSQRFKTTLNSISAKFQRGLEYGFQRIKRFSLSFKSFLFSRAFSSNFSSRKKILDPQGPFLQKWNKIFVLLCVIAVSLDPLFFYVPVIDDEKKCLSLDNKMEITATVLRTFSDIFYIVHMIFQFRTGFIAPSSRVFGRGVLVEDSWAIAKRYLTSYFLVDILSVLPLPQVVILIVIPGMSGYKSLNTKNLLKFIVFFQYIPRVFRIIPLYKEVTRTSGILTETAWAGAVFNLFLYMLASHVVGAFWYLFSIERETTCWQKACTRSNATCNKEDMYCNNHQGGLSTISTFLNASCPIKETNTTLFDFGIFLDALQSGVVESRDFPQKFFYCFWWGLKSLSSLGQNLTTSTFVWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRQRIRRYEQYKWQETRGVDEDNLICNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLYTEESYIVREGDPVDEMLFIMRGRLLTMTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYAKKKLEESLVEEENRLKDALAKVGGSSPSLGATIYASRFAANALRLLRRNRTRKTRMPERIPPMLLQKPAEPDFTDEEQ 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03378 717 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 72 712 - -
Arst6g03378 717 Coils Coil 640 660 - -
Arst6g03378 717 CDD CAP_ED 488 619 IPR000595 -
Arst6g03378 717 FunFam Cyclic nucleotide-gated ion channel 1 415 479 - -
Arst6g03378 717 Gene3D Helix hairpin bin 414 479 - -
Arst6g03378 717 ProSiteProfiles cAMP/cGMP binding motif profile. 488 572 IPR000595 -
Arst6g03378 717 FunFam Cyclic nucleotide-gated ion channel 1 486 604 - -
Arst6g03378 717 SUPERFAMILY Voltage-gated potassium channels 85 410 - -
Arst6g03378 717 Gene3D - 91 412 - -
Arst6g03378 717 SUPERFAMILY cAMP-binding domain-like 417 610 IPR018490 -
Arst6g03378 717 SMART cnmp_10 488 619 IPR000595 -
Arst6g03378 717 Pfam Cyclic nucleotide-binding domain 508 599 IPR000595 -
Arst6g03378 717 Gene3D Jelly Rolls 486 606 IPR014710 -
Arst6g03378 717 Pfam Ion transport protein 94 415 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03378 Arst-Chr6 101193751 101199686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03378 1 716 Ion Channels AT5G53130 78.999 0.0 1150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03378 K05391 - gmx:100801032 1218.76