Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03310 ATGAGCCAGTGTGTTCCCAGCTGGGAGGTGGAGGATACCAATCCACCGCCCCCAAGACCCTCTCTACGTTCCAACTCCAACTCAACCATCCCTGACGTTCCCATGTTAGACTATGAAGTCGCAGAACTAACATGGGAAAATGGACAGCTATCAATGCATGGGTTAGGGTTCCCGCGAGTGCCGACGAAATCCTCGGCGGTTACAACAACCGCCAATAAGTACACATGGGAAAAGCCTCGTGCAAGTGGCACATTGGAATCCATAGTCAACCAAGCAACTACCACACCCCAAAACGCCAAATCAACAACCTTCCACGGTTTCGGCGGTGGTGGCAACGGAGGCGGTGTCTATGAAAATCTGTTAGTCCCGTGGGTTGATCCCCACCGTGTCCCGGCCACCGTTATTTCTCCGGGAACTTCAAACACCATGACCATGGACGCGCTGGTACCGTGCTCAAACCGGGTAGAGGAGCAAAGAACGCCGCAAGTTATGGACTCCATCTCCGGAGGGCTTGGACCGTGCATGGCGGGTCGCACCACACGTATGGGCAGCGGTGATGCCAAAGATGGAGGCGCCCTTGAAAAGCGCGCCGCCATGGTGAGACGTGTGCCGGCACCGACGGTGTCGGCACATGAGATGAGTAGCAGGGATCAGAGTGTGAGTGGCAGCGCCACCTTTGGGAGGGAAAGCCGGCACGTGACACTTGACACGTGCGAGAGGGAGTTCGGAGTGGGTTTCACTACTTCGACGTCGATGGGGTCGCCGGAAAATACAAGCTCTGCAAAGCAGTGCACCAAGACCAACACCATTGACGACCATGATTCCGTTTGCCACAGTGATTAAAATCTTAAGAAGAAAGAAACTGGAAAATCTTCTCTGTCCACTAAAAGGAGTAGAGCCGCAGCTATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATAAACCAAAGGATGAAGACATTGCAAAAGCTGGTCCCAAATTCTAGCAAGACGGACAAAGCTTCAATGTTGGATGAAGTGATAGAATATCTTAAACAGTTGCAAGCACAAGTGCAGATGGTGAACAGGATCAACATGTCATCCATGATGCTTCCCATGACCATGCAACAACAGCTTCAAATGTCAATGATGGCTCCCATGGGCATGGGAATGGGGATGGGCATGGGCATGGGCATGGCGGGGATGGGCATGGGGATGGATATGAACACCCTTAGTCGCACTAATATCCCTCCTGGAATCCCTCCAGTCCTCCACCCTTCTCCCTTCATGCCTATGCCTTCTTGGGATGCTGCTGCTACCGCCACTGCTGCCGCCGCAACTGGAGCTGCCGACCGACTTCAAGGACCTACACCCTCCGCCATGCCTGATCATTTATCCTCATTTTTCGGATGTCCATCACAGCCCATGAGCATGGATGCCTACAGTAGGATTGCCGCCATGTACCAGCAGCTTCAGCACCAACAACCTCCCCCTTCAGGTTCCAATAAGACCTGA 1497 0.5291 MSQCVPSWEVEDTNPPPPRPSLRSNSNSTIPDVPMLDYEVAELTWENGQLSMHGLGFPRVPTKSSAVTTTANKYTWEKPRASGTLESIVNQATTTPQNAKSTTFHGFGGGGNGGGVYENLLVPWVDPHRVPATVISPGTSNTMTMDALVPCSNRVEEQRTPQVMDSISGGLGPCMAGRTTRMGSGDAKDGGALEKRAAMVRRVPAPTVSAHEMSSRDQSVSGSATFGRESRHVTLDTCEREFGVGFTTSTSMGSPENTSSAKQCTKTNTIDDHDSVCHSDXNLKKKETGKSSLSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMVNRINMSSMMLPMTMQQQLQMSMMAPMGMGMGMGMGMGMAGMGMGMDMNTLSRTNIPPGIPPVLHPSPFMPMPSWDAAATATAAAATGAADRLQGPTPSAMPDHLSSFFGCPSQPMSMDAYSRIAAMYQQLQHQQPPPSGSNKT 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03310 498 Gene3D - 294 359 IPR036638 GO:0046983
Arst6g03310 498 MobiDBLite consensus disorder prediction 1 31 - -
Arst6g03310 498 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 297 361 IPR036638 GO:0046983
Arst6g03310 498 CDD bHLH_AtPIF_like 299 360 IPR047265 -
Arst6g03310 498 SMART finulus 305 354 IPR011598 GO:0046983
Arst6g03310 498 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 40 493 IPR031066 -
Arst6g03310 498 MobiDBLite consensus disorder prediction 246 266 - -
Arst6g03310 498 MobiDBLite consensus disorder prediction 164 190 - -
Arst6g03310 498 Pfam Helix-loop-helix DNA-binding domain 304 349 IPR011598 GO:0046983
Arst6g03310 498 MobiDBLite consensus disorder prediction 246 296 - -
Arst6g03310 498 FunFam transcription factor UNE10 isoform X1 294 359 - -
Arst6g03310 498 Coils Coil 305 325 - -
Arst6g03310 498 MobiDBLite consensus disorder prediction 267 293 - -
Arst6g03310 498 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 299 348 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03310 Arst-Chr6 100520392 100527979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03310 1 476 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 44.898 2.81e-90 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst6g03310 HLH 7.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03310 - - ahf:112697399 883.634