Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03294 ATGGACTCCACAAATCTGAGCTACGAGCAGAAGCTTCAAGTTGTGGCACGAATCGTAGACGAAGGCGACGCACGCGTTTGCGACGCGCCGCCCCGTGAAGTAGAGCTCGGGCTTACGGCGACCCTCAAACCCCACCAGGTTGAAGGGGTTTCATGGCTTATACGGAGGTATAAACTCGGGGTCAACGTCGTTCTCGATGGGACTAGGCAAGACTTTACAAGCTATCGGTTTACTAAGCTATCTAAAAGTATACCAATTATCACCTGGGCCATTTTTGTGACAGATGGTTGGGTGTCAGAGATAGTGAAATTTGCCCCAAAACTGGATGTCTTTAAATATGTTGGTGATAAAGAATACAGGCGCGAGCTCCGTATGAAAATATACGAACATGTAAAAGGGCAGCGATCAACAGATGTATTGTTGCCATTTGATGTGCTGTTAACAACTTATGAAATTGCAATGATGGATCAGGACTTCCTTTCTCAAATACCATGGCATTATGCAATTATTGATGAGGCTCAAAGACTTAAAAACCCATCAAGTGTTTTATTTAATGTTCTCAAAGATCACTATATCATGCCAAGACGGTTGTTAATGACTGGCACACCTATTCAGAATAACCTCTCTGAGTTATGGTCCCTGATGCATTTCTGTATGCCTGTTGTCTTTGGTACGCTGGATCAGTTCCTTTTCACTTTCAAGGATATCGGTGAGCTTACATCAGAAGTTCATAATCCAAGGGCAAAAGAGCAACTTAAAATTCTGAAAGGATTATTGGGAGCCTTTATGCTTCGACGTACCAAATCAAAGCTTGTTGAGAGTGGAAATCTAGTGTTACCACTCCTCACTGAGACAACCATGTTGGTACCCCTTACTAGCCTGCAAAAAAAGGTCTACATGTCAATATTGAGGAAGGAACTTCCAAAGCTACTTGCACTATGTTCTGGAGCTTCAAATCATCAGTCACTTCAGAATATTGTGGTACAACTTAGAAAAGCATGCAGCCATCCTTATCTCTTTCCAGGTATCGAGCCTGAACCTTTTGAAGAAGGTGAACATCTCATTCAGGCGTGTGGCAAGCTGCTGATTCTGGACCAGCTTCTTCAGAAGCTATACTCTTCTGGACACCGTGTTCTTCTTTTTGCACAGATGACTCATACACTCGATATTTTACAGGATTTTCTGGAGTTAAGGAAGTATTCCTACGAGCGTCTTGATGGTTCAGTTAGGGCTGAGGAGCGTTTTGCTGCAATAAGAAGTTTCAGCAGCTCATCAGCTAATATGGCCTTAAATTCTGATCCTGACAATCCTGGAGCTTTTGTTTTCATGATTTCAACAAGAGCTGGGGGAGTTGGGTTGAATCTTGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAATCCTCAGGTGGACAAGCAAGCTTTGCAGAGAGCACATAGAATTGGCCAGTTGAACCATGTTTTATGTATAAACCTTGTCACAGAGCATACAGTGGAGGAAGTAATTATGCGTAGAGCAGAGAAAAAATTACGGCTAAGCCTCAATGTTATAGGTGAAAATGTCGTGGATCATAAAGAAAATGAAGCAACTGGAGTTGGAATTAGTGATTTGAAATCCATCATATTTGGGTTACATATGTTTGACCCCACTGAGATGAATGATAGAAAACATGGGGACATTAGCGTACAAGAACTAAATGCTATGGCTGAAAAGGTGATTGCTATGCGTGATGAACAAAATTCTGACAAGGATGACAGGAAACTTGAGGTCAATGCAAGAAACCTTTTGAAAGGACATGAAGATACAGAAGTTTCTGGTGCGCTATCTTGTGATCTTGGTCTTGATGAGGCTTCATATCTCTCTTGGGTTAAAAATTTTGAGGAAGTGTCTAAAACAAGTTGTGATACAATGTTGGATTCAAGGAGCAGAAGGAGTTCAGATGAGGATAAGAGTTCAAAAATTGAGTCTGCGAAGAAGAAGGCAGAGGAAAAGAAGTTGTCCAAGTGGAAATCTGTTGGATACCATTCACTGACTGTTGACGACCCTATCTGTCCACAAGATGGTGATATTATATCAGCTGCAGGATCTGTTCATTTTGTGCATGGAGATTGTACAGCTCCGTCAAATGTTTCTCTGTCTGAACCTGCTATGGTATTCAGCTGCGTTGATACCTCTGGACGCTGGGGTCATGGTGGAATGTTTGATTCACTGACCAGACTTTCTACAAGTATTGGTTATGCATATGAATGGGCTTCTGAAAATGAGGACCTGCATCTTGGTGATCTCCATCTTATAAAATTAGAAGATGGCCATGATGAACAAAACATGGACACAAATACTGTCAAATGGGTCGCTTTAGCTGTGGTTCAGTCATACAATCCAAGGCGTAAAGTCCCCCGAAGTGATATCTCACTTCTCCACTTGGAGAAATGCTTAGCGAAGACAGCATTCTCAGCTGCTCAAAATTCTGCATCAATCCACATGCCACGCATTGGTTATCAAGATGGTTCTGAGCGTTCTGAGTGGTACACCATTGAGCGGCTACTAAGAAAATATGCCTCCATTTACAACATAAATATATATGTGTAA 2595 0.4197 MDSTNLSYEQKLQVVARIVDEGDARVCDAPPREVELGLTATLKPHQVEGVSWLIRRYKLGVNVVLDGTRQDFTSYRFTKLSKSIPIITWAIFVTDGWVSEIVKFAPKLDVFKYVGDKEYRRELRMKIYEHVKGQRSTDVLLPFDVLLTTYEIAMMDQDFLSQIPWHYAIIDEAQRLKNPSSVLFNVLKDHYIMPRRLLMTGTPIQNNLSELWSLMHFCMPVVFGTLDQFLFTFKDIGELTSEVHNPRAKEQLKILKGLLGAFMLRRTKSKLVESGNLVLPLLTETTMLVPLTSLQKKVYMSILRKELPKLLALCSGASNHQSLQNIVVQLRKACSHPYLFPGIEPEPFEEGEHLIQACGKLLILDQLLQKLYSSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSVRAEERFAAIRSFSSSSANMALNSDPDNPGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQLNHVLCINLVTEHTVEEVIMRRAEKKLRLSLNVIGENVVDHKENEATGVGISDLKSIIFGLHMFDPTEMNDRKHGDISVQELNAMAEKVIAMRDEQNSDKDDRKLEVNARNLLKGHEDTEVSGALSCDLGLDEASYLSWVKNFEEVSKTSCDTMLDSRSRRSSDEDKSSKIESAKKKAEEKKLSKWKSVGYHSLTVDDPICPQDGDIISAAGSVHFVHGDCTAPSNVSLSEPAMVFSCVDTSGRWGHGGMFDSLTRLSTSIGYAYEWASENEDLHLGDLHLIKLEDGHDEQNMDTNTVKWVALAVVQSYNPRRKVPRSDISLLHLEKCLAKTAFSAAQNSASIHMPRIGYQDGSERSEWYTIERLLRKYASIYNINIYV 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03294 864 Pfam Helicase conserved C-terminal domain 360 484 IPR001650 -
Arst6g03294 864 Gene3D Leucine Aminopeptidase, subunit E, domain 1 695 864 IPR043472 -
Arst6g03294 864 MobiDBLite consensus disorder prediction 639 660 - -
Arst6g03294 864 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 120 221 IPR014001 -
Arst6g03294 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 527 IPR027417 -
Arst6g03294 864 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 35 595 IPR031053 GO:0003678|GO:0006281|GO:0006338
Arst6g03294 864 Pfam SNF2-related domain 93 339 IPR000330 GO:0005524|GO:0140658
Arst6g03294 864 FunFam Putative helicase CHR10 277 588 - -
Arst6g03294 864 CDD SF2_C_SNF 358 495 - -
Arst6g03294 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 266 IPR027417 -
Arst6g03294 864 SUPERFAMILY Macro domain-like 699 864 IPR043472 -
Arst6g03294 864 Gene3D - 279 594 IPR027417 -
Arst6g03294 864 Gene3D - 72 278 IPR038718 -
Arst6g03294 864 SMART ultradead3 38 229 IPR014001 -
Arst6g03294 864 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 363 531 IPR001650 -
Arst6g03294 864 SMART helicmild6 389 484 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03294 Arst-Chr6 100216347 100235092 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03294 360 514 RAD5 or RAD16-like Gene Family AT5G22750 34.839 2.40e-20 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst6g03294 SNF2_N 7.1e-35 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03294 K20092 - gmx:100797182 1189.87