Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03293 ATGATGGATCAGGACTTCCTTTCTCAAATACCATGGCATTATGCAATTATTGATGAGGCTCAAAGACTTAAAAACCCATCAAGTGTTTTATTTAATGTTCTCAAAGATCACTATATCATGCCAAGACGGTTGTTAATGACTGGCACACCTATTCAGAATAACCTCTCTGAGTTATGGTCCCTGATGCATTTCTGTATGCCTGTTGTCTTTGGTACGCTGGATCAGTTCCTTTTCACTTTCAAGGATATCGGTGAGCTTACATCAGAAGTTCATAATCCAAGGGCAAAAGAGCAACTTAAAATTCTGAAAGGATTATTGGGAGCCTTTATGCTTCGACGTACCAAATCAAAGCTTGTTGAGAGTGGAAATCTAGTGTTACCACTCCTCACTGAGACAACCATGTTGGTACCCCTTACTAGCCTGCAAAAAAAGGTCTACATGTCAATATTGAGGAAGGAACTTCCAAAGCTACTTGCACTATGTTCTGGAGCTTCAAATCATCAGTCACTTCAGAATATTGTGGTACAACTTAGAAAAGCATGCAGCCATCCTTATCTCTTTCCAGGTATCGAGCCTGAACCTTTTGAAGAAGGTGAACATCTCATTCAGGCGTGTGGCAAGCTGCTGATTCTGGACCAGCTTCTTCAGAAGCTATACTCTTCTGGACACCGTGTTCTTCTTTTTGCACAGATGACTCATACACTCGATATTTTACAGGATTTTCTGGAGTTAAGGAAGTATTCCTACGAGCGTCTTGATGGTTCAGTTAGGGCTGAGGAGCGTTTTGCTGCAATAAGAAGTTTCAGCAGCTCATCAGCTAATATGGCCTTAAATTCTGATCCTGACAATCCTGGAGCTTTTGTTTTCATGATTTCAACAAGAGCTGGGGGAGTTGGGTTGAATCTTGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAATCCTCAGGTGGACAAGCAAGCTTTGCAGAGAGCACATAGAATTGGCCAGTTGAACCATGTTTTATGTATAAACCTTGTCACAGAGCATACAGTGGAGGAAGTAATTATGCGTAGAGCAGAGAAAAAATTACGGCTAAGCCTCAATGTTATAGGTGAAAATGTCGTGGATCATAAAGAAAATGAAGCAACTGGAGTTGGAATTAGTGATTTGAAATCCATCATATTTGGGTTACATATGTTTGACCCCACTGAGATGAATGATAGAAAACATGGGGACATTAGCGTACAAGAACTAAATGCTATGGCTGAAAAGGTGATTGCTATGCGTGATGAACAAAATTCTGACAAGGATGACAGGAAACTTGAGGTCAATGCAAGAAACCTTTTGAAAGGACATGAAGATACAGAAGTTTCTGGTGCGCTATCTTGTGATCTTGGTCTTGATGAGGCTTCATATCTCTCTTGGGTTAAAAATTTTGAGGAAGTGTCTAAAACAAGTTGTGATACAATGTTGGATTCAAGGAGCAGAAGGAGTTCAGATGAGGATAAGAGTTCAAAAATTGAGTCTGCGAAGAAGAAGGCAGAGGAAAAGAAGTTGTCCAAGTGGAAATCTGTTGGATACCATTCACTGACTGTTGACGACCCTATCTGTCCACAAGATGGTGATATTATATCAGCTGCAGGATCTGTTCATTTTGTGCATGGAGATTGTACAGCTCCGTCAAATGTTTCTCTGTCTGAACCTGCTATGGTATTCAGCTGCGTTGATACCTCTGGACGCTGGGGTCATGGTGGAATGTTTGATTCACTGACCAGACTTTCTACAAGTATTGGTTATGCATATGAATGGGCTTCTGAAAATGAGGACCTGCATCTTGGTGATCTCCATCTTATAAAATTAGAAGATGGCCATGATGAACAAAACATGGACACAAATACTGTCAAATGGGTCGCTTTAGCTGTGGTTCAGTCATACAATCCAAGGCGTAAAGTCCCCCGAAGTGATATCTCACTTCTCCACTTGGAGAAATGCTTAGCGAAGACAGCATTCTCAGCTGCTCAAAATTCTGCATCAATCCACATGCCACGCATTGGTTATCAAGATGGTTCTGAGCGTTCTGAGTGGTACACCATTGAGCGGCTACTAAGAAAATATGCCTCCATTTACAACATAAATATATATGTATACTATTATCGAAGAGTGCGCCAAGACTCCGGGCTCAGATAA 2175 0.4115 MMDQDFLSQIPWHYAIIDEAQRLKNPSSVLFNVLKDHYIMPRRLLMTGTPIQNNLSELWSLMHFCMPVVFGTLDQFLFTFKDIGELTSEVHNPRAKEQLKILKGLLGAFMLRRTKSKLVESGNLVLPLLTETTMLVPLTSLQKKVYMSILRKELPKLLALCSGASNHQSLQNIVVQLRKACSHPYLFPGIEPEPFEEGEHLIQACGKLLILDQLLQKLYSSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSVRAEERFAAIRSFSSSSANMALNSDPDNPGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQLNHVLCINLVTEHTVEEVIMRRAEKKLRLSLNVIGENVVDHKENEATGVGISDLKSIIFGLHMFDPTEMNDRKHGDISVQELNAMAEKVIAMRDEQNSDKDDRKLEVNARNLLKGHEDTEVSGALSCDLGLDEASYLSWVKNFEEVSKTSCDTMLDSRSRRSSDEDKSSKIESAKKKAEEKKLSKWKSVGYHSLTVDDPICPQDGDIISAAGSVHFVHGDCTAPSNVSLSEPAMVFSCVDTSGRWGHGGMFDSLTRLSTSIGYAYEWASENEDLHLGDLHLIKLEDGHDEQNMDTNTVKWVALAVVQSYNPRRKVPRSDISLLHLEKCLAKTAFSAAQNSASIHMPRIGYQDGSERSEWYTIERLLRKYASIYNINIYVYYYRRVRQDSGLR 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03293 724 Pfam SNF2-related domain 5 186 IPR000330 GO:0005524|GO:0140658
Arst6g03293 724 Gene3D - 1 125 IPR038718 -
Arst6g03293 724 SUPERFAMILY Macro domain-like 546 713 IPR043472 -
Arst6g03293 724 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 1 442 IPR031053 GO:0003678|GO:0006281|GO:0006338
Arst6g03293 724 FunFam Putative helicase CHR10 124 435 - -
Arst6g03293 724 Gene3D Leucine Aminopeptidase, subunit E, domain 1 545 721 IPR043472 -
Arst6g03293 724 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 210 378 IPR001650 -
Arst6g03293 724 Gene3D - 126 442 IPR027417 -
Arst6g03293 724 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 68 IPR014001 -
Arst6g03293 724 MobiDBLite consensus disorder prediction 486 507 - -
Arst6g03293 724 Pfam Helicase conserved C-terminal domain 207 331 IPR001650 -
Arst6g03293 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 374 IPR027417 -
Arst6g03293 724 SMART helicmild6 236 331 IPR001650 -
Arst6g03293 724 CDD SF2_C_SNF 205 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03293 Arst-Chr6 100215945 100232042 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03293 207 361 RAD5 or RAD16-like Gene Family AT5G22750 34.839 1.39e-20 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst6g03293 SNF2_N 2.1e-26 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03293 K20092 - gmx:100797182 1009.98