Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03292 ATGGGACTAGGCAAGACTTTACAAGCTATCGGTTTACTAAGCTATCTAAAAGTATACCAATTATCACCTGGGCCATTTTTGGTTATATGTCCTCTAAGTGTGACAGATGGTTGGGTGTCAGAGATAGTGAAATTTGCCCCAAAACTGGATGTCTTTAAATATGTTGGTGATAAAGAATACAGGCGCGAGCTCCGTATGAAAATATACGAACATGTAAAAGGGCAGCGATCAACAGATGTATTGTTGCCATTTGATGTGCTGTTAACAACTTATGAAATTGCAATGATGGATCAGGACTTCCTTTCTCAAATACCATGGCATTATGCAATTATTGATGAGGCTCAAAGACTTAAAAACCCATCAAGTGTTTTATTTAATGTTCTCAAAGATCACTATATCATGCCAAGACGGTTGTTAATGACTGGCACACCTATTCAGAATAACCTCTCTGAGTTATGGTCCCTGATGCATTTCTGTATGCCTGTTGTCTTTGGTACGCTGGATCAGTTCCTTTTCACTTTCAAGGATATCGGTGAGCTTACATCAGAAGTTCATAATCCAAGGGCAAAAGAGCAACTTAAAATTCTGAAAGGATTATTGGGAGCCTTTATGCTTCGACGTACCAAATCAAAGCTTGTTGAGAGTGGAAATCTAGTGTTACCACTCCTCACTGAGACAACCATGTTGGTACCCCTTACTAGCCTGCAAAAAAAGGTCTACATGTCAATATTGAGGAAGGAACTTCCAAAGCTACTTGCACTATGTTCTGGAGCTTCAAATCATCAGTCACTTCAGAATATTGTGGTACAACTTAGAAAAGCATGCAGCCATCCTTATCTCTTTCCAGGTATCGAGCCTGAACCTTTTGAAGAAGGTGAACATCTCATTCAGGCGTGTGGCAAGCTGCTGATTCTGGACCAGCTTCTTCAGAAGCTATACTCTTCTGGACACCGTGTTCTTCTTTTTGCACAGATGACTCATACACTCGATATTTTACAGGATTTTCTGGAGTTAAGGAAGTATTCCTACGAGCGTCTTGATGGTTCAGTTAGGGCTGAGGAGCGTTTTGCTGCAATAAGAAGTTTCAGCAGCTCATCAGCTAATATGGCCTTAAATTCTGATCCTGACAATCCTGGAGCTTTTGTTTTCATGATTTCAACAAGAGCTGGGGGAGTTGGGTTGAATCTTGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAATCCTCAGGTGGACAAGCAAGCTTTGCAGAGAGCACATAGAATTGGCCAGTTGAACCATGTTTTATGTATAAACCTTGTCACAGAGCATACAGTGGAGGAAGTAATTATGCGTAGAGCAGAGAAAAAATTACGGCTAAGCCTCAATGTTATAGGTGAAAATGTCGTGGATCATAAAGAAAATGAAGCAACTGGAGTTGGAATTAGTGATTTGAAATCCATCATATTTGGGTTACATATGTTTGACCCCACTGAGATGAATGATAGAAAACATGGGGACATTAGCGTACAAGAACTAAATGCTATGGCTGAAAAGGTGATTGCTATGCGTGATGAACAAAATTCTGACAAGGATGACAGGAAACTTGAGGTCAATGCAAGAAACCTTTTGAAAGGACATGAAGATACAGAAGTTTCTGGTGCGCTATCTTGTGATCTTGGTCTTGATGAGGCTTCATATCTCTCTTGGGTTAAAAATTTTGAGGAAGTGTCTAAAACAAGTTGTGATACAATGTTGGATTCAAGGAGCAGAAGGAGTTCAGATGAGGATAAGAGTTCAAAAATTGAGTCTGCGAAGAAGAAGGCAGAGGAAAAGAAGTTGTCCAAGTGGAAATCTGTTGGATACCATTCACTGACTGTTGACGACCCTATCTGTCCACAAGATGGTGATATTATATCAGCTGCAGGATCTGTTCATTTTGTGCATGGAGATTGTACAGCTCCGTCAAATGTTTCTCTGTCTGAACCTGCTATGGTATTCAGCTGCGTTGATACCTCTGGACGCTGGGGTCATGGTGGAATGTTTGATTCACTGACCAGACTTTCTACAAGTATTGGTTATGCATATGAATGGGCTTCTGAAAATGAGGACCTGCATCTTGGTGATCTCCATCTTATAAAATTAGAAGATGGCCATGATGAACAAAACATGGACACAAATACTGTCAAATGGGTCGCTTTAGCTGTGGTTCAGTCATACAATCCAAGGCGTAAAGTCCCCCGAAGTGATATCTCACTTCTCCACTTGGAGAAATGCTTAGCGAAGACAGCATTCTCAGCTGCTCAAAATTCTGCATCAATCCACATGCCACGCATTGGTTATCAAGATGGTTCTGAGCGTTCTGAGTGGTACACCATTGAGCGGCTACTAAGAAAATATGCCTCCATTTACAACATAAATATATATGTATACTATTATCGAAGAGTGCGCCAAGACTCCGGGCTCAGATAA 2457 0.4086 MGLGKTLQAIGLLSYLKVYQLSPGPFLVICPLSVTDGWVSEIVKFAPKLDVFKYVGDKEYRRELRMKIYEHVKGQRSTDVLLPFDVLLTTYEIAMMDQDFLSQIPWHYAIIDEAQRLKNPSSVLFNVLKDHYIMPRRLLMTGTPIQNNLSELWSLMHFCMPVVFGTLDQFLFTFKDIGELTSEVHNPRAKEQLKILKGLLGAFMLRRTKSKLVESGNLVLPLLTETTMLVPLTSLQKKVYMSILRKELPKLLALCSGASNHQSLQNIVVQLRKACSHPYLFPGIEPEPFEEGEHLIQACGKLLILDQLLQKLYSSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSVRAEERFAAIRSFSSSSANMALNSDPDNPGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQLNHVLCINLVTEHTVEEVIMRRAEKKLRLSLNVIGENVVDHKENEATGVGISDLKSIIFGLHMFDPTEMNDRKHGDISVQELNAMAEKVIAMRDEQNSDKDDRKLEVNARNLLKGHEDTEVSGALSCDLGLDEASYLSWVKNFEEVSKTSCDTMLDSRSRRSSDEDKSSKIESAKKKAEEKKLSKWKSVGYHSLTVDDPICPQDGDIISAAGSVHFVHGDCTAPSNVSLSEPAMVFSCVDTSGRWGHGGMFDSLTRLSTSIGYAYEWASENEDLHLGDLHLIKLEDGHDEQNMDTNTVKWVALAVVQSYNPRRKVPRSDISLLHLEKCLAKTAFSAAQNSASIHMPRIGYQDGSERSEWYTIERLLRKYASIYNINIYVYYYRRVRQDSGLR 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03292 818 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 304 472 IPR001650 -
Arst6g03292 818 SUPERFAMILY Macro domain-like 640 807 IPR043472 -
Arst6g03292 818 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 162 IPR014001 -
Arst6g03292 818 MobiDBLite consensus disorder prediction 580 601 - -
Arst6g03292 818 Gene3D Leucine Aminopeptidase, subunit E, domain 1 639 815 IPR043472 -
Arst6g03292 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 207 IPR027417 -
Arst6g03292 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 468 IPR027417 -
Arst6g03292 818 Pfam Helicase conserved C-terminal domain 301 425 IPR001650 -
Arst6g03292 818 FunFam Putative helicase CHR10 218 529 - -
Arst6g03292 818 Pfam SNF2-related domain 1 280 IPR000330 GO:0005524|GO:0140658
Arst6g03292 818 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 1 536 IPR031053 GO:0003678|GO:0006281|GO:0006338
Arst6g03292 818 SMART helicmild6 330 425 IPR001650 -
Arst6g03292 818 Gene3D - 1 219 IPR038718 -
Arst6g03292 818 CDD SF2_C_SNF 299 436 - -
Arst6g03292 818 SMART ultradead3 1 170 IPR014001 -
Arst6g03292 818 Gene3D - 220 535 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03292 Arst-Chr6 100215945 100234909 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03292 301 455 RAD5 or RAD16-like Gene Family AT5G22750 34.839 2.07e-20 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst6g03292 SNF2_N 4.3e-45 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03292 K20092 - gmx:100797182 1155.97