Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03290 ATGGCTTATACGGAGATGGGACTAGGCAAGACTTTACAAGCTATCGGTTTACTAAGCTATCTAAAAGTATACCAATTATCACCTGGGCCATTTTTGGTTATATGTCCTCTAAGTGTGACAGATGGTTGGGTGTCAGAGATAGTGAAATTTGCCCCAAAACTGGATGTCTTTAAATATGTTGGTGATAAAGAATACAGGCGCGAGCTCCGTATGAAAATATACGAACATGTAAAAGGGCAGCGATCAACAGATGTATTGTTGCCATTTGATGTGCTGTTAACAACTTATGAAATTGCAATGATGGATCAGGACTTCCTTTCTCAAATACCATGGCATTATGCAATTATTGATGAGGCTCAAAGACTTAAAAACCCATCAAGTGTTTTATTTAATGTTCTCAAAGATCACTATATCATGCCAAGACGGTTGTTAATGACTGGCACACCTATTCAGAATAACCTCTCTGAGTTATGGTCCCTGATGCATTTCTGTATGCCTGTTGTCTTTGGTACGCTGGATCAGTTCCTTTTCACTTTCAAGGATATCGGTGAGCTTACATCAGAAGTTCATAATCCAAGGGCAAAAGAGCAACTTAAAATTCTGAAAGGATTATTGGGAGCCTTTATGCTTCGACGTACCAAATCAAAGCTTGTTGAGAGTGGAAATCTAGTGTTACCACTCCTCACTGAGACAACCATGTTGGTACCCCTTACTAGCCTGCAAAAAAAGGTCTACATGTCAATATTGAGGAAGGAACTTCCAAAGCTACTTGCACTATGTTCTGGAGCTTCAAATCATCAGTCACTTCAGAATATTGTGGTACAACTTAGAAAAGCATGCAGCCATCCTTATCTCTTTCCAGGTATCGAGCCTGAACCTTTTGAAGAAGGTGAACATCTCATTCAGGCGTGTGGCAAGCTGCTGATTCTGGACCAGCTTCTTCAGAAGCTATACTCTTCTGGACACCGTGTTCTTCTTTTTGCACAGATGACTCATACACTCGATATTTTACAGGATTTTCTGGAGTTAAGGAAGTATTCCTACGAGCGTCTTGATGGTTCAGTTAGGGCTGAGGAGCGTTTTGCTGCAATAAGAAGTTTCAGCAGCTCATCAGCTAATATGGCCTTAAATTCTGATCCTGACAATCCTGGAGCTTTTGTTTTCATGATTTCAACAAGAGCTGGGGGAGTTGGGTTGAATCTTGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAATCCTCAGGTGGACAAGCAAGCTTTGCAGAGAGCACATAGAATTGGCCAGTTGAACCATGTTTTATGTATAAACCTTGTCACAGAGCATACAGTGGAGGAAGTAATTATGCGTAGAGCAGAGAAAAAATTACGGCTAAGCCTCAATGTTATAGGTGAAAATGTCGTGGATCATAAAGAAAATGAAGCAACTGGAGTTGGAATTAGTGATTTGAAATCCATCATATTTGGGTTACATATGTTTGACCCCACTGAGATGAATGATAGAAAACATGGGGACATTAGCGTACAAGAACTAAATGCTATGGCTGAAAAGGTGATTGCTATGCGTGATGAACAAAATTCTGACAAGGATGACAGGAAACTTGAGGTCAATGCAAGAAACCTTTTGAAAGGACATGAAGATACAGAAGTTTCTGGTGCGCTATCTTGTGATCTTGGTCTTGATGAGGCTTCATATCTCTCTTGGGTTAAAAATTTTGAGGAAGTGTCTAAAACAAGTTGTGATACAATGTTGGATTCAAGGAGCAGAAGGAGTTCAGATGAGGATAAGAGTTCAAAAATTGAGTCTGCGAAGAAGAAGGCAGAGGAAAAGAAGTTGTCCAAGTGGAAATCTGTTGGATACCATTCACTGACTGTTGACGACCCTATCTGTCCACAAGATGGTGATATTATATCAGCTGCAGGATCTGTTCATTTTGTGCATGGAGATTGTACAGCTCCGTCAAATGTTTCTCTGTCTGAACCTGCTATGGTATTCAGCTGCGTTGATACCTCTGGACGCTGGGGTCATGGTGGAATGTTTGATTCACTGACCAGACTTTCTACAAGTATTGGTTATGCATATGAATGGGCTTCTGAAAATGAGGACCTGCATCTTGGTGATCTCCATCTTATAAAATTAGAAGATGGCCATGATGAACAAAACATGGACACAAATACTGTCAAATGGGTCGCTTTAGCTGTGGTTCAGTCATACAATCCAAGGCGTAAAGTCCCCCGAAGTGATATCTCACTTCTCCACTTGGAGAAATGCTTAGCGAAGACAGCATTCTCAGCTGCTCAAAATTCTGCATCAATCCACATGCCACGCATTGGTTATCAAGATGGTTCTGAGCGTTCTGAGTGGTACACCATTGAGCGGCTACTAAGAAAATATGCCTCCATTTACAACATAAATATATATGTATACTATTATCGAAGAGTGCGCCAAGACTCCGGGCTCAGATAA 2472 0.409 MAYTEMGLGKTLQAIGLLSYLKVYQLSPGPFLVICPLSVTDGWVSEIVKFAPKLDVFKYVGDKEYRRELRMKIYEHVKGQRSTDVLLPFDVLLTTYEIAMMDQDFLSQIPWHYAIIDEAQRLKNPSSVLFNVLKDHYIMPRRLLMTGTPIQNNLSELWSLMHFCMPVVFGTLDQFLFTFKDIGELTSEVHNPRAKEQLKILKGLLGAFMLRRTKSKLVESGNLVLPLLTETTMLVPLTSLQKKVYMSILRKELPKLLALCSGASNHQSLQNIVVQLRKACSHPYLFPGIEPEPFEEGEHLIQACGKLLILDQLLQKLYSSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSVRAEERFAAIRSFSSSSANMALNSDPDNPGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQLNHVLCINLVTEHTVEEVIMRRAEKKLRLSLNVIGENVVDHKENEATGVGISDLKSIIFGLHMFDPTEMNDRKHGDISVQELNAMAEKVIAMRDEQNSDKDDRKLEVNARNLLKGHEDTEVSGALSCDLGLDEASYLSWVKNFEEVSKTSCDTMLDSRSRRSSDEDKSSKIESAKKKAEEKKLSKWKSVGYHSLTVDDPICPQDGDIISAAGSVHFVHGDCTAPSNVSLSEPAMVFSCVDTSGRWGHGGMFDSLTRLSTSIGYAYEWASENEDLHLGDLHLIKLEDGHDEQNMDTNTVKWVALAVVQSYNPRRKVPRSDISLLHLEKCLAKTAFSAAQNSASIHMPRIGYQDGSERSEWYTIERLLRKYASIYNINIYVYYYRRVRQDSGLR 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03290 823 SMART ultradead3 1 175 IPR014001 -
Arst6g03290 823 Gene3D Leucine Aminopeptidase, subunit E, domain 1 644 820 IPR043472 -
Arst6g03290 823 SMART helicmild6 335 430 IPR001650 -
Arst6g03290 823 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 5 541 IPR031053 GO:0003678|GO:0006281|GO:0006338
Arst6g03290 823 Pfam SNF2-related domain 5 285 IPR000330 GO:0005524|GO:0140658
Arst6g03290 823 SUPERFAMILY Macro domain-like 645 812 IPR043472 -
Arst6g03290 823 Pfam Helicase conserved C-terminal domain 306 430 IPR001650 -
Arst6g03290 823 Gene3D - 225 540 IPR027417 -
Arst6g03290 823 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 167 IPR014001 -
Arst6g03290 823 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 212 IPR027417 -
Arst6g03290 823 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 473 IPR027417 -
Arst6g03290 823 MobiDBLite consensus disorder prediction 585 606 - -
Arst6g03290 823 CDD SF2_C_SNF 304 441 - -
Arst6g03290 823 Gene3D - 4 224 IPR038718 -
Arst6g03290 823 FunFam Putative helicase CHR10 223 534 - -
Arst6g03290 823 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 309 477 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03290 Arst-Chr6 100215945 100234962 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03290 306 460 RAD5 or RAD16-like Gene Family AT5G22750 34.839 1.95e-20 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst6g03290 SNF2_N 4.6e-46 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03290 K20092 - gmx:100797182 1157.9