Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03289 ATGGACTCCACAAATCTGAGCTACGAGCAGAAGCTTCAAGTTGTGGCACGAATCGTAGACGAAGGCGACGCACGCGTTTGCGACGCGCCGCCCCGTGAAGTAGAGCTCGGGCTTACGGCGACCCTCAAACCCCACCAGGTTGAAGGGGTTTCATGGCTTATACGGAGGTATAAACTCGGGGTCAACGTCGTTCTCGGTGAGATTATTCAGATGGGACTAGGCAAGACTTTACAAGCTATCGGTTTACTAAGCTATCTAAAAGTATACCAATTATCACCTGGGCCATTTTTGGTTATATGTCCTCTAAGTGTGACAGATGGTTGGGTGTCAGAGATAGTGAAATTTGCCCCAAAACTGGATGTCTTTAAATATGTTGGTGATAAAGAATACAGGCGCGAGCTCCGTATGAAAATATACGAACATGTAAAAGGGCAGCGATCAACAGATGTATTGTTGCCATTTGATGTGCTGTTAACAACTTATGAAATTGCAATGATGGATCAGGACTTCCTTTCTCAAATACCATGGCATTATGCAATTATTGATGAGGCTCAAAGACTTAAAAACCCATCAAGTGTTTTATTTAATGTTCTCAAAGATCACTATATCATGCCAAGACGGTTGTTAATGACTGGCACACCTATTCAGAATAACCTCTCTGAGTTATGGTCCCTGATGCATTTCTGTATGCCTGTTGTCTTTGGTACGCTGGATCAGTTCCTTTTCACTTTCAAGGATATCGGTGAGCTTACATCAGAAGTTCATAATCCAAGGGCAAAAGAGCAACTTAAAATTCTGAAAGGATTATTGGGAGCCTTTATGCTTCGACGTACCAAATCAAAGCTTGTTGAGAGTGGAAATCTAGTGTTACCACTCCTCACTGAGACAACCATGTTGGTACCCCTTACTAGCCTGCAAAAAAAGGTCTACATGTCAATATTGAGGAAGGAACTTCCAAAGCTACTTGCACTATGTTCTGGAGCTTCAAATCATCAGTCACTTCAGAATATTGTGGTACAACTTAGAAAAGCATGCAGCCATCCTTATCTCTTTCCAGGTATCGAGCCTGAACCTTTTGAAGAAGGTGAACATCTCATTCAGGCGTGTGGCAAGCTGCTGATTCTGGACCAGCTTCTTCAGAAGCTATACTCTTCTGGACACCGTGTTCTTCTTTTTGCACAGATGACTCATACACTCGATATTTTACAGGATTTTCTGGAGTTAAGGAAGTATTCCTACGAGCGTCTTGATGGTTCAGTTAGGGCTGAGGAGCGTTTTGCTGCAATAAGAAGTTTCAGCAGCTCATCAGCTAATATGGCCTTAAATTCTGATCCTGACAATCCTGGAGCTTTTGTTTTCATGATTTCAACAAGAGCTGGGGGAGTTGGGTTGAATCTTGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAATCCTCAGGTGGACAAGCAAGCTTTGCAGAGAGCACATAGAATTGGCCAGTTGAACCATGTTTTATGTATAAACCTTGTCACAGAGCATACAGTGGAGGAAGTAATTATGCGTAGAGCAGAGAAAAAATTACGGCTAAGCCTCAATGTTATAGGTGAAAATGTCGTGGATCATAAAGAAAATGAAGCAACTGGAGTTGGAATTAGTGATTTGAAATCCATCATATTTGGGTTACATATGTTTGACCCCACTGAGATGAATGATAGAAAACATGGGGACATTAGCGTACAAGAACTAAATGCTATGGCTGAAAAGGTGATTGCTATGCGTGATGAACAAAATTCTGACAAGGATGACAGGAAACTTGAGGTCAATGCAAGAAACCTTTTGAAAGGACATGAAGATACAGAAGTTTCTGGTGCGCTATCTTGTGATCTTGGTCTTGATGAGGCTTCATATCTCTCTTGGGTTAAAAATTTTGAGGAAGTGTCTAAAACAAGTTGTGATACAATGTTGGATTCAAGGAGCAGAAGGAGTTCAGATGAGGATAAGAGTTCAAAAATTGAGTCTGCGAAGAAGAAGGCAGAGGAAAAGAAGTTGTCCAAGTGGAAATCTGTTGGATACCATTCACTGACTGTTGACGACCCTATCTGTCCACAAGATGGTGATATTATATCAGCTGCAGGATCTGTTCATTTTGTGCATGGAGATTGTACAGCTCCGTCAAATGTTTCTCTGTCTGAACCTGCTATGGTATTCAGCTGCGTTGATACCTCTGGACGCTGGGGTCATGGTGGAATGTTTGATTCACTGACCAGACTTTCTACAAGTATTGGTTATGCATATGAATGGGCTTCTGAAAATGAGGACCTGCATCTTGGTGATCTCCATCTTATAAAATTAGAAGATGGCCATGATGAACAAAACATGGACACAAATACTGTCAAATGGGTCGCTTTAGCTGTGGTTCAGTCATACAATCCAAGGCGTAAAGTCCCCCGAAGTGATATCTCACTTCTCCACTTGGAGAAATGCTTAGCGAAGACAGCATTCTCAGCTGCTCAAAATTCTGCATCAATCCACATGCCACGCATTGGTTATCAAGATGGTTCTGAGCGTTCTGAGTGGTACACCATTGAGCGGCTACTAAGAAAATATGCCTCCATTTACAACATAAATATATATGTATACTATTATCGAAGAGTGCGCCAAGACTCCGGGCTCAGATAA 2667 0.4199 MDSTNLSYEQKLQVVARIVDEGDARVCDAPPREVELGLTATLKPHQVEGVSWLIRRYKLGVNVVLGEIIQMGLGKTLQAIGLLSYLKVYQLSPGPFLVICPLSVTDGWVSEIVKFAPKLDVFKYVGDKEYRRELRMKIYEHVKGQRSTDVLLPFDVLLTTYEIAMMDQDFLSQIPWHYAIIDEAQRLKNPSSVLFNVLKDHYIMPRRLLMTGTPIQNNLSELWSLMHFCMPVVFGTLDQFLFTFKDIGELTSEVHNPRAKEQLKILKGLLGAFMLRRTKSKLVESGNLVLPLLTETTMLVPLTSLQKKVYMSILRKELPKLLALCSGASNHQSLQNIVVQLRKACSHPYLFPGIEPEPFEEGEHLIQACGKLLILDQLLQKLYSSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSVRAEERFAAIRSFSSSSANMALNSDPDNPGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQLNHVLCINLVTEHTVEEVIMRRAEKKLRLSLNVIGENVVDHKENEATGVGISDLKSIIFGLHMFDPTEMNDRKHGDISVQELNAMAEKVIAMRDEQNSDKDDRKLEVNARNLLKGHEDTEVSGALSCDLGLDEASYLSWVKNFEEVSKTSCDTMLDSRSRRSSDEDKSSKIESAKKKAEEKKLSKWKSVGYHSLTVDDPICPQDGDIISAAGSVHFVHGDCTAPSNVSLSEPAMVFSCVDTSGRWGHGGMFDSLTRLSTSIGYAYEWASENEDLHLGDLHLIKLEDGHDEQNMDTNTVKWVALAVVQSYNPRRKVPRSDISLLHLEKCLAKTAFSAAQNSASIHMPRIGYQDGSERSEWYTIERLLRKYASIYNINIYVYYYRRVRQDSGLR 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03289 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 538 IPR027417 -
Arst6g03289 888 SUPERFAMILY Macro domain-like 710 877 IPR043472 -
Arst6g03289 888 CDD SF2_C_SNF 369 506 - -
Arst6g03289 888 SMART ultradead3 38 240 IPR014001 -
Arst6g03289 888 SMART helicmild6 400 495 IPR001650 -
Arst6g03289 888 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 35 606 IPR031053 GO:0003678|GO:0006281|GO:0006338
Arst6g03289 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 277 IPR027417 -
Arst6g03289 888 Gene3D Leucine Aminopeptidase, subunit E, domain 1 709 885 IPR043472 -
Arst6g03289 888 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 232 IPR014001 -
Arst6g03289 888 MobiDBLite consensus disorder prediction 650 671 - -
Arst6g03289 888 Gene3D - 21 289 IPR038718 -
Arst6g03289 888 Pfam SNF2-related domain 70 350 IPR000330 GO:0005524|GO:0140658
Arst6g03289 888 Pfam Helicase conserved C-terminal domain 371 495 IPR001650 -
Arst6g03289 888 FunFam Putative helicase CHR10 288 599 - -
Arst6g03289 888 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 374 542 IPR001650 -
Arst6g03289 888 Gene3D - 290 605 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03289 Arst-Chr6 100215945 100235092 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03289 371 525 RAD5 or RAD16-like Gene Family AT5G22750 34.839 2.70e-20 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst6g03289 SNF2_N 2.5e-45 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03289 K20092 - gmx:100797182 1242.25