Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03259 ATGGGTTCTGTGAGTAACACAAATCCATGGGTGGCTCCAAATTCAGTTTTGAAGGACTGTTCCCAAGGGATTTGCAGCATGTATTGTCCTCAATGGTGCTACATCATGTACTCGCCTCCACCACCGTCAATCGTTCTCGGGGACGGTTCAGATGACGATGATTCTTCCTCCGGCTTCCAATTCTCTCCCCTTATAGTCGCAGTGATTGGAATCTTGGCAAGTACTTTCATCTTGGTCACTTACTACACCGTCATCTCAAGGTTCTGCAGGAACAGAGGAAGAGTTAACGATCAAGCAAATCATAGCAATGATGATACTGTTAATAACAATGAACCTTCTCAGGTTGCTGCGACTTCCGGCATGGACGAGGCTCAGATCAAATCGATAACCGTCTGTAAGTACATCAAGAACGGTGGGTTGGTTGAGGGAAGTGACTGTTCCGTTTGTTTATCAGAGTTTCAAGAGAATGAGAGTTTGAGATTGTTGCCCAAATGTAACCACGCTTTTCATCTTCCTTGTATTGATACTTGGCTTAAATCACAAGCTAGTTGTCCCTTGTGCCGCTCCAATATTGTTTTCTGTAATAATAACTCCAATCCCAGTCACTCTGACTCGGCATTGACACAGATTCCACATCCACCACCGGCAACTGTCAGTGTCAATTCCTTGGAATATCAGCAGAGGAGTGATGATGTTGTTGCAATAATTGTTCAGAGTTCACAGCATCAGCAAGTTGTGGTTGATTTTGGTAGTCAAGTCCAGGTAAAATGGCCCAACGTTGAAAGTGCTACTAATTTGGATCAAAGAAGATTATCCGTTGCTGACATTTTGAATCAAAATGATGAAGCTGATGTGTAG 858 0.4347 MGSVSNTNPWVAPNSVLKDCSQGICSMYCPQWCYIMYSPPPPSIVLGDGSDDDDSSSGFQFSPLIVAVIGILASTFILVTYYTVISRFCRNRGRVNDQANHSNDDTVNNNEPSQVAATSGMDEAQIKSITVCKYIKNGGLVEGSDCSVCLSEFQENESLRLLPKCNHAFHLPCIDTWLKSQASCPLCRSNIVFCNNNSNPSHSDSALTQIPHPPPATVSVNSLEYQQRSDDVVAIIVQSSQHQQVVVDFGSQVQVKWPNVESATNLDQRRLSVADILNQNDEADV 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03259 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 193 IPR013083 -
Arst6g03259 285 SUPERFAMILY RING/U-box 140 197 - -
Arst6g03259 285 SMART ring_2 146 187 IPR001841 -
Arst6g03259 285 PANTHER RING-H2 FINGER PROTEIN ATL16 53 243 IPR044600 GO:0016567|GO:0016740
Arst6g03259 285 CDD RING-H2_EL5-like 145 188 - -
Arst6g03259 285 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Arst6g03259 285 FunFam E3 ubiquitin-protein ligase ATL6 109 193 - -
Arst6g03259 285 Pfam Ring finger domain 145 188 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03259 Arst-Chr6 99780641 99782091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03259 1 279 C3H Transcription Factor Family AT3G03550 42.671 6.62e-67 211