Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03246 ATGGCTTCTAAACTTTACAAAGATGCCTCCAATGGTGATGAGGCAACAACAAAGCCTGTTCACTTCTTCAAGATCCTGCTCCCGAGCACCATTTTAGATGGAAAAATTATGATTCCTAGAAAGTTTGTAAGGGAATATGGAGAACGCTTGTCCAACAAAGTTGTTCTTAAGCTTCCAAATGGCACAGAATGGGAGGTATATTTGGAGAAACATGATGGAAGAATTTGGTTACAAAATGGTTGGAAAGAGTTTGTGGAGTATCACTCTCTACGGTTTGGGGATCTATTGGTTTTTAGATTTGATGGAACATCTCATTTTAATGTGTTCATATGTGATATGAGTGCCACGGAAATAGACTACCCCTTCAAGAATAAATATGGTAAAAGGGCCAACACTAGTGATGAGGAACTTCTTCCTCGTAAAACCAAGAGAACAAATGCAAACAACAAAGATGGGGGTAAGTTGAAGAATCCAAGGGAAGGAAAGATGTCCAATGACTTGCTTTCTAAAACTAAACCATCGGGTTTTGGAAAATTTGAAACTACAGAAGTTGCGAAAAATACTTCCTTCACGGTTATGATAAAACCAAACAGAGGATCATGTTGCATGTGGTTACCGAGGGGCTCCTTAAAGGATTATATCAAACCTGGCAAGCAAACTGTTACATTGTTGGTTGGAGAAAGATCTTCAAAGGTTAGGTTGATCTATTACGAAAAACATTCTACCGGTTGCCTTACAGCAGGTTGGACAAGATTTGCAAGGGAATCTGATTTGGAAGTAGGGGATGCATGTTCCTTTGAATTACTAGCTAACCATTCTGAAGACATAGTCATGAAGGTTTCCATTTTTAAGCACTCCACTACTGAGCCATAA 873 0.3906 MASKLYKDASNGDEATTKPVHFFKILLPSTILDGKIMIPRKFVREYGERLSNKVVLKLPNGTEWEVYLEKHDGRIWLQNGWKEFVEYHSLRFGDLLVFRFDGTSHFNVFICDMSATEIDYPFKNKYGKRANTSDEELLPRKTKRTNANNKDGGKLKNPREGKMSNDLLSKTKPSGFGKFETTEVAKNTSFTVMIKPNRGSCCMWLPRGSLKDYIKPGKQTVTLLVGERSSKVRLIYYEKHSTGCLTAGWTRFARESDLEVGDACSFELLANHSEDIVMKVSIFKHSTTEP 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03246 290 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Arst6g03246 290 SUPERFAMILY DNA-binding pseudobarrel domain 186 285 IPR015300 -
Arst6g03246 290 CDD B3_DNA 190 284 IPR003340 GO:0003677
Arst6g03246 290 MobiDBLite consensus disorder prediction 133 166 - -
Arst6g03246 290 SMART B3_2 189 286 IPR003340 GO:0003677
Arst6g03246 290 SMART B3_2 22 114 IPR003340 GO:0003677
Arst6g03246 290 CDD B3_DNA 21 112 IPR003340 GO:0003677
Arst6g03246 290 Gene3D - 177 287 IPR015300 -
Arst6g03246 290 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Arst6g03246 290 Gene3D - 14 115 IPR015300 -
Arst6g03246 290 ProSiteProfiles B3 DNA-binding domain profile. 245 286 IPR003340 GO:0003677
Arst6g03246 290 MobiDBLite consensus disorder prediction 133 167 - -
Arst6g03246 290 Pfam B3 DNA binding domain 22 111 IPR003340 GO:0003677
Arst6g03246 290 Pfam B3 DNA binding domain 190 285 IPR003340 GO:0003677
Arst6g03246 290 PANTHER B3 DOMAIN-CONTAINING 15 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03246 Arst-Chr6 99597391 99599938 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03246 187 284 B3 DNA Binding Superfamily AT3G18990 33.663 1.72e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Arst6g03246 B3 9.5e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03246 - - aprc:113849508 286.189