Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03233 ATGAGCGGGAGGATGAATAAGTGGTCCCATTTGAAGATGGCTTGGATTGAACACTCCCAGATCAACCGAAAAGACGGTTACATAACAAACCCACCTCCTCTTGTTTCAACATCCCCATATTCTGGAACTTTCCAGAAAGAACCTTCTGCTTCAACAACACCCTCACCTTCCACATCCGGCGCTAAAATCAGTCCAGCTGTGCTCTTCATCATAGTGATTCTAGCTGTTCTTTTCTTCATCTCCGGTCTCCTTCACCTTCTTGTTAGGTTTCTCGTTAAAAACCCTTCATCTTCCTCTGCATCTGCTCAACCTAATCGGCACCATGAAGGTTCTCTCTCTGACACTCTTCAGAGGCAGCTTCAGCAGCTTTTCCATCTCCATGACTCTGGTCTTGACCAGGCTTTCATCGATGCGCTTCCTGTTTTCCAGTACAAGGAGATCAAGGGGCCGAAGGAGCCTTTCGACTGCGCCGTTTGCCTCTGCGAGTTCTCCGACAAGGATAAGCTCCGGTTGCTCCCTGTGTGCAGCCATGCCTTCCACATCAGCTGTATAGACACATGGCTTCTTTCGAATTCGACTTGCCCACTCTGTAGAGGAACACTCTTCGCGCCGGGGTTTTCCATGGAGAATCCGGTGTTTGATTTCAATGATTTGAGGGAAGACGAGGGCTGCCAATTCCCCTGTAGTAACAATAACAATGGAGGGAAGATGGTTGCAGTTCAAGACATTGAAGAAGCTGCGGACAAGGGGGTTGTCCCTGTGAGGCTTGGTAAATTTAGGAGGGTTGATTTGGAGGCGGCCGAGCCGGAAGGTGGAGAGGCTAGTAGTAGTAATTTGGATGCAAGAAGATGTTTCTCAATGGGGTCTTACCAGTATGTACTTGGAAAATCGGATCTCCGGATAACCTTGAATTGTGATCATCGCCGGCAGGGTCGCGGCGATGATAATTCGGAGGAGGGATCAAGTGAGGTTGAGAGGGAAGGAAAGAACATTACTAGTGTTAGCAGAGGAGAGAGCTATTCTGTTTCCAAAATATGGTTGTGGTCAAAGAAGGGAAAATTTTCAGTTTCTTCAGATGCACACAACATTGGATTACCATCTTCTCTTGATTCAGATTTGCCTTGGATGAGAGAAATGGAAGGTACATCAGAAAAGGTATAA 1161 0.472 MSGRMNKWSHLKMAWIEHSQINRKDGYITNPPPLVSTSPYSGTFQKEPSASTTPSPSTSGAKISPAVLFIIVILAVLFFISGLLHLLVRFLVKNPSSSSASAQPNRHHEGSLSDTLQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIKGPKEPFDCAVCLCEFSDKDKLRLLPVCSHAFHISCIDTWLLSNSTCPLCRGTLFAPGFSMENPVFDFNDLREDEGCQFPCSNNNNGGKMVAVQDIEEAADKGVVPVRLGKFRRVDLEAAEPEGGEASSSNLDARRCFSMGSYQYVLGKSDLRITLNCDHRRQGRGDDNSEEGSSEVEREGKNITSVSRGESYSVSKIWLWSKKGKFSVSSDAHNIGLPSSLDSDLPWMREMEGTSEKV 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03233 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 59 346 - -
Arst6g03233 386 MobiDBLite consensus disorder prediction 307 332 - -
Arst6g03233 386 SUPERFAMILY RING/U-box 135 204 - -
Arst6g03233 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 203 IPR013083 -
Arst6g03233 386 MobiDBLite consensus disorder prediction 307 333 - -
Arst6g03233 386 MobiDBLite consensus disorder prediction 38 60 - -
Arst6g03233 386 Pfam Ring finger domain 155 198 IPR001841 -
Arst6g03233 386 MobiDBLite consensus disorder prediction 355 386 - -
Arst6g03233 386 CDD RING-H2_EL5-like 155 198 - -
Arst6g03233 386 ProSiteProfiles Zinc finger RING-type profile. 156 198 IPR001841 -
Arst6g03233 386 SMART ring_2 156 197 IPR001841 -
Arst6g03233 386 FunFam RING-H2 finger protein ATL46 118 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03233 Arst-Chr6 99332252 99334268 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03233 55 353 C3H Transcription Factor Family AT2G18650 42.433 9.86e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03233 - - qsa:O6P43_004596 475.322