Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03200 ATGGAGTTTAATCAAAATTTCTTTGAGGATTTCACTTATCTTTCTGGGACTATTTATGAAAATCCATGCATAAAGACAGAGATATCCACCATGGTTCCCATGCAACAAAAATCCCTCCTTGTATATCCTCCATTGAAAAATGAAATTTTATACAAGAACGATTTCCACCATCTTCAATCCTTAAAAGATATTACAAACACATTCTGCTCCATGGCATTTGTACCAAACAAGAACCAAGTGGAGGATATTCATGCTTTTCCAAACAACCACAATAGCTTATGGGATTTATCTCAGAAAAACCAAGTTCAAATTGATGATGCTTTCGTACCATCATTAATTTATGATGCATCTCTATTGGTGCCAATGAATTTCAAGCTCCAGGATGAGCTTTCAACCTTAACTCCAACGGAAAATGCTCACTGGAACAATATTCAAAATCCTTTTCTCAACAACCAAATGCCCCAAAAAAAGGGACTAAGGAGGAAAGGCAACATTCAACAAAGTGTTACCGAAATAATCAAAGGCCAGTGGAGTGCAGATGAGGATATGTTACTAACACAGCTAGTTGAACTCTTTGGGTTTAAAAATTGGACCTACATAGCAACACTAATCAGCGGTAGGATAGGAAAGCAATGTAGAGAGAGATGGTTCAATCATCTTCAGCCGGATATTAAGGACTCCTGGGATGAAGAAGAGGATAAACTACTAATTGAAGCTCACAAGCAAGTTGGAAATAAGTGGGCTGAAATTGCAAGGAGGCTCCCCGGCCGCACTGAGAACACAATTAAGAACCACTGGAACGCCGCTAAGCGAAAGAAGAGTAGCAAGAGACAACCCAGGAAGAAGAAGAACCAGACTTACTTTGGGGAATCATTGCTTGAGCGCTACGTCAAAGAGGTCACTGCAGCTGATGCGGCAAAAAAGCAGCTAAAGAAATCCATGAAACAGTTGAAAATAAAGAATGAGGATTACAACCTGCAGCAGAATGCATGCATCACTGGGTATGGTGGCAATATACCAGTGAAGTTCAGTTCTAATGAAATTGGGAATGGTTCTGTTCTGATTGATGGCACAGAGAACTATGTTCCAATGGAGCTTGATATGATTGGAATTGAGGCCTACATGAACTAG 1131 0.3979 MEFNQNFFEDFTYLSGTIYENPCIKTEISTMVPMQQKSLLVYPPLKNEILYKNDFHHLQSLKDITNTFCSMAFVPNKNQVEDIHAFPNNHNSLWDLSQKNQVQIDDAFVPSLIYDASLLVPMNFKLQDELSTLTPTENAHWNNIQNPFLNNQMPQKKGLRRKGNIQQSVTEIIKGQWSADEDMLLTQLVELFGFKNWTYIATLISGRIGKQCRERWFNHLQPDIKDSWDEEEDKLLIEAHKQVGNKWAEIARRLPGRTENTIKNHWNAAKRKKSSKRQPRKKKNQTYFGESLLERYVKEVTAADAAKKQLKKSMKQLKIKNEDYNLQQNACITGYGGNIPVKFSSNEIGNGSVLIDGTENYVPMELDMIGIEAYMN 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03200 376 SUPERFAMILY Homeodomain-like 172 266 IPR009057 -
Arst6g03200 376 ProSiteProfiles Myb-like domain profile. 225 270 IPR001005 -
Arst6g03200 376 Coils Coil 293 327 - -
Arst6g03200 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 225 274 IPR017930 -
Arst6g03200 376 Pfam Myb-like DNA-binding domain 174 220 IPR001005 -
Arst6g03200 376 Pfam Myb-like DNA-binding domain 225 267 IPR001005 -
Arst6g03200 376 FunFam Transcriptional activator Myb isoform A 173 225 - -
Arst6g03200 376 Gene3D - 227 290 - -
Arst6g03200 376 CDD SANT 227 267 IPR001005 -
Arst6g03200 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 171 224 IPR017930 -
Arst6g03200 376 SMART sant 224 272 IPR001005 -
Arst6g03200 376 SMART sant 173 222 IPR001005 -
Arst6g03200 376 CDD SANT 177 220 IPR001005 -
Arst6g03200 376 Gene3D - 173 226 - -
Arst6g03200 376 PANTHER MYB PROTEIN-RELATED 166 284 - -
Arst6g03200 376 ProSiteProfiles Myb-like domain profile. 169 220 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03200 Arst-Chr6 98829816 98837787 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03200 56 300 MYB Transcription Factor Family AT4G18770 42.169 1.28e-57 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Arst6g03200 Myb_DNA-binding 4.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03200 K09422 - adu:107469217 290.812