Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03079 ATGATGATCATTACCTTCTTACACATGAAAGCATTGATCTGTTTCTTCTTCTTTGTGTTTGTCCCCACATCGGGGAATGACCTCTTAAGCTGTGAGACAACTTCACCAGATGCATCTGGCTACAGCTGCATACAAAATAATAAAAGCTCTATTCAATGTGCAACATTTGCACTCATTCACACAAATCCATACTTTTCTTCTCTCTCAAACCTCACTCATTACTTGGGACTTAACCGTTTTCTGATAGCAAAATCAAATGGTTTCTCTCCAGAAAACACTGAAATCCTCTCCAATGATCAACCCCTTTTGATACCAATTGATTGCAAGTGCAGCAAACATGGTTTTTTCTATGCTGAATTAACCAAAACCACCATCAAAGGTGAGAGCTTCCATGGCATTGCTGAATCACTTGAAGGCTTAACTACCTGCAAGGCCATAAAAGATCGAAACCCCGGCGTGTCGCCTTCGAATCTCAACGGAGAATTCAAGTTGCTGATTCCATTAAGATGTGCATGCCCAGTTTCATCTTCTCAAGAACAGAGGGCTCTGCTTTCTTATCCTGTAAGTAAAGGCGACACAGTTTCGAATTTGGCTTCAAAGTTTAATGTTACCATAGAATCCATAATTTCTACAAATAATTTATCATCATCAGAAGGGTTTGAAACTCAAAGCCTTACACCTTTTACATGCCTTCTGATTCCATTGTTAAATGATAATCCTGTGGCTAAACCCTCTAATAATCCGGTGATTAGTCCACAAAAGAAAACAAAAATGTGGAGAACTGAGTTGTGTATTGGCCTAGCCGGTGTTGCACTTGGACTCTTCATTGCTTCGTTAGTGGGATTCTTTTTCATCAGATTGAAGAACAAGAAGCAGAGTGTGAAGAACAATAATAAGTGTAAAGAGTTAGATATGGAGCTTCAACATCTGAATCTGAGTGTAAGAACAACCAGTGACAAAAAAGTCTCATTCGAGGTACCTCACGAGGGGAAGATCCTAGAAGCTGCGACGCCTCGAAAGATTTTCCTTGAGACATACACAAGGGAGGAAATTCGGAACGCAACAGAAGACTTCAGCTCAAGCAATCACATTGAGGGGCCGGTGTTCCATGGCCGATTGAACGGCAAGAACATAGCAATAAAAAGAACAACGAACGATGTGGTTTCGAAGATAGAGTTCGGCCTCTTCCACCACTCAGTTCAACGTCACCCCAACATTCTAATGCTTCTTGGAACAACAAGCTTGCTAGAGGGTCCAGATTCCTACCTGGTTTTCGAGTATGCGAAAAACGGATCCTTGAAAGACTGGCTTCACGGTGGCTTGGCAATCAAGAATCAGTTCATTGCTTCATGCTATTGTTTCTTGACGTGGAGGCAGAGGCTCCGGATCTGCCTCGACATAGCCGGCGCCTTGCAGTACATGCACCATGTGATGATCCCAAGCTATGTTCATAGGAACATAAAGAGTAGGAACATTTTCTTGGATGAAGAGTTTGGTGCAAAACTTGGGAATTTTGGTATGGCAATGTGTGCTGAGAATGAAACTGAAGATCCACATTTCTATTCCACAAACCCTGCTTCTTGGAGCCTTGGTTATTTGGCACCTGAATTTGTTCATCAAGGTGTAGTTTCCCCAAGCATTGATGTGTTTGCTTATGGGGTGGTTTTGTTGGAGGTTTTGTCCGGCCAGACACCCATAAGCAGGCCTAATGACAAGGGTGAAGGGAGTGTTTGGCTCACGGATAAAATCCGGTCGATTTTGGCGTCGGAGAAGAATGCAATTGAGCTGAGGGAGTGGATTGATAGTGCCTTAGGGGAGAACTATTCGTTCGATGCAGCTTTCGAATTGGCTAACATTGCAAGGGCTTGTGTTGAAGATGTGGCTTCTTTGAGACCAAGTGCAAATGAAATTGTTGACAAGATTTCAAGATTGGTGGAGGAGTTTCCGGATGATGAACACCACATGTTAATCACCGAAAGCTCTAGCAAGCCACTGGTTAATGCTGTATGA 2010 0.4279 MMIITFLHMKALICFFFFVFVPTSGNDLLSCETTSPDASGYSCIQNNKSSIQCATFALIHTNPYFSSLSNLTHYLGLNRFLIAKSNGFSPENTEILSNDQPLLIPIDCKCSKHGFFYAELTKTTIKGESFHGIAESLEGLTTCKAIKDRNPGVSPSNLNGEFKLLIPLRCACPVSSSQEQRALLSYPVSKGDTVSNLASKFNVTIESIISTNNLSSSEGFETQSLTPFTCLLIPLLNDNPVAKPSNNPVISPQKKTKMWRTELCIGLAGVALGLFIASLVGFFFIRLKNKKQSVKNNNKCKELDMELQHLNLSVRTTSDKKVSFEVPHEGKILEAATPRKIFLETYTREEIRNATEDFSSSNHIEGPVFHGRLNGKNIAIKRTTNDVVSKIEFGLFHHSVQRHPNILMLLGTTSLLEGPDSYLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWRQRLRICLDIAGALQYMHHVMIPSYVHRNIKSRNIFLDEEFGAKLGNFGMAMCAENETEDPHFYSTNPASWSLGYLAPEFVHQGVVSPSIDVFAYGVVLLEVLSGQTPISRPNDKGEGSVWLTDKIRSILASEKNAIELREWIDSALGENYSFDAAFELANIARACVEDVASLRPSANEIVDKISRLVEEFPDDEHHMLITESSSKPLVNAV 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03079 669 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 22 648 - -
Arst6g03079 669 Pfam Protein kinase domain 373 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Arst6g03079 669 Gene3D LysM domain 173 241 IPR036779 -
Arst6g03079 669 CDD LysM 185 217 IPR018392 -
Arst6g03079 669 ProSiteProfiles LysM domain profile. 120 166 IPR018392 -
Arst6g03079 669 SUPERFAMILY LysM domain 185 217 IPR036779 -
Arst6g03079 669 Gene3D Phosphorylase Kinase; domain 1 334 427 - -
Arst6g03079 669 Pfam LysM domain 186 218 IPR018392 -
Arst6g03079 669 ProSiteProfiles LysM domain profile. 184 233 IPR018392 -
Arst6g03079 669 ProSiteProfiles Protein kinase domain profile. 354 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Arst6g03079 669 SUPERFAMILY Protein kinase-like (PK-like) 342 651 IPR011009 -
Arst6g03079 669 Gene3D Transferase(Phosphotransferase) domain 1 428 661 - -
Arst6g03079 669 FunFam PTI1-like tyrosine-protein kinase 3 428 655 - -
Arst6g03079 669 SMART LysM_2 121 167 IPR018392 -
Arst6g03079 669 SMART LysM_2 185 234 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03079 Arst-Chr6 96750169 96752842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03079 40 666 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 40.673 2.24e-148 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Arst6g03079 Pkinase 5e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03079 - - gmx:100816082 918.302