Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03052 ATGACGTCGCCATTTGGTTTTTCCTGGGAAGTGTCATCTCCCTCATTGTTGCAAGAACAGGAGGAAGATTTGGAACTTTATCTAACTCTCATCGGAGATAAAATAGCAGATTACTTCATTCTCAAGGTACGAGTTAGGCATCAAACGTGCTGGACTACTCATCCTCAACAACCACAATCACATTATCCAGTGTTAGGAGCCACTGATACGTTTGCATGTCACAGCTCAATTCTAATGCAAGCGCAAGAATTCCTTCAAAACGGTTCATCACACATCCAATTGCATTTTCCTGATGATGTTATACCAAATGTCTTGATTCATCACATAATGCCAGATGTCATATCCTACGCGGAAGCCACAATTCAAACTCGTCCTTCCGGATTCCTCTACGAAAGACCTGATTTTCGTTTGTTCAGTTTGAATTTGGACATTATTATCCAGAATTCGTTAGAGTTTGTTGATGACTACGGCGACATTATCACCGACTTCATCATTGAAGATTCCATGGGAAATACTAATATTAAGATGGTTCCTACTTCGAAGAGTGCCATTGATTCTCTTGAGGAAGTGAAGCTTGAAAAGAATAACAATGCAACAGAGAGGTGCAGTATTTGTCTATCTGAATTTGATTACGGTGATGATGCAGAACAAGTTTTATCAATGCCTTGTAAGCATCTGTATCATCAAGAATGCATCATCCGCTGGCTCAAGACTAGTCATTTATGCCCTTTATGTCGCTATCCGATGCCAACAAATTAG 759 0.4005 MTSPFGFSWEVSSPSLLQEQEEDLELYLTLIGDKIADYFILKVRVRHQTCWTTHPQQPQSHYPVLGATDTFACHSSILMQAQEFLQNGSSHIQLHFPDDVIPNVLIHHIMPDVISYAEATIQTRPSGFLYERPDFRLFSLNLDIIIQNSLEFVDDYGDIITDFIIEDSMGNTNIKMVPTSKSAIDSLEEVKLEKNNNATERCSICLSEFDYGDDAEQVLSMPCKHLYHQECIIRWLKTSHLCPLCRYPMPTN 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03052 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 91 250 - -
Arst6g03052 252 SMART ringv_2 201 246 IPR011016 GO:0008270
Arst6g03052 252 SUPERFAMILY RING/U-box 184 250 - -
Arst6g03052 252 SMART ring_2 202 245 IPR001841 -
Arst6g03052 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 251 IPR013083 -
Arst6g03052 252 ProSiteProfiles Zinc finger RING-type profile. 202 246 IPR001841 -
Arst6g03052 252 Pfam Ring finger domain 201 246 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03052 Arst-Chr6 96277169 96277927 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03052 173 250 C3H Transcription Factor Family AT1G18760 41.026 1.00e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03052 - - adu:110276959 372.089