Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g03016 ATGGATTGGGATTGGAAAGAGTTTGCTTGGGATGCATCTGAGTTGGACCCCTCTCACAAGAATAGTAACAGTGAAGAAGCTTCTTCAGTTGATTTGCGCCTGGCCGGTGAGGCCTCTGATTTGGAAAAGAAAGAAGAAGAATCATCAATAAGAACTGTGTCGTCTTCGTCATCGTCGGCAAAGAGATCCCGTTTGCAAAATGGGCCACAGAATTTGTCTTGTTTGGTTGATGGATGCAGCTTTGATCTTAGTGATTGCAGGGAGTATCATAGGCGTCACAGGGTCTGCGAGAAGCACTCCAAAACCCCGGTTGTGTTGGTTGGGGGAAAGCAGCAGAGGTTTTGCCAACAATGCAGCAGGTTTCATTCACTTGGGGAGTTTGATGAGGTTAAGAGGAGTTGCCGGAAGCGTCTTGATGGGCATAATAGGCGCCGGAGGAAACCTCAGCCGCCATCTTTCCTCATGAGTTCTGAGAAGTTCATGTACAATTACAAAGGACCTAGGATCCTGCATTTTGGTAACCCTCAACCATATGCAAACCCTATTGTGAGAAACATGTGGCCTGCTGCATCCATATCCGGAGCCAAAGCTGAGTATGATCATCACCGGTTTCTATATCGAATCGACAAGCACAGGCAGGACAAGGAGCTTCTTCTCTGGCAAGATAATGTTCCAAAATCATTCAATGAATCCACAGCAATGCCGGGAACTCCAATCCACCAGCCTATCTGTGGCAGCACCATTGCCCCATCAACAACTGCAAAGCTCGGCCTTAAGAAGCCGCTGCCTTCTGATGGCAAACCTGGGTGTTTTGATGCAGGTTGTGCTCTCTATCTTCTGTCAACAATACAAACACAAACACAGTCTCCGTCCTCAGGGACCGAGCAATTCGATGCTGCGGTTGATAAGCCTGGTAGCCATCAAGTATTAGTTCTTGATGCTAACACAACCAACCTTCATTGCAATGGGATGCTGCAAATGGGACATGATGGATTGGTTGAAAATGGTGACTCACTTGCACTTCCATTTTTTTGGGAGTAG 1041 0.4717 MDWDWKEFAWDASELDPSHKNSNSEEASSVDLRLAGEASDLEKKEEESSIRTVSSSSSSAKRSRLQNGPQNLSCLVDGCSFDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSFLMSSEKFMYNYKGPRILHFGNPQPYANPIVRNMWPAASISGAKAEYDHHRFLYRIDKHRQDKELLLWQDNVPKSFNESTAMPGTPIHQPICGSTIAPSTTAKLGLKKPLPSDGKPGCFDAGCALYLLSTIQTQTQSPSSGTEQFDAAVDKPGSHQVLVLDANTTNLHCNGMLQMGHDGLVENGDSLALPFFWE 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g03016 346 Gene3D - 65 135 IPR036893 GO:0003677|GO:0005634
Arst6g03016 346 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 18 309 IPR044817 GO:0003677
Arst6g03016 346 MobiDBLite consensus disorder prediction 15 67 - -
Arst6g03016 346 Pfam SBP domain 74 147 IPR004333 GO:0003677
Arst6g03016 346 MobiDBLite consensus disorder prediction 51 67 - -
Arst6g03016 346 ProSiteProfiles Zinc finger SBP-type profile. 71 148 IPR004333 GO:0003677
Arst6g03016 346 MobiDBLite consensus disorder prediction 36 50 - -
Arst6g03016 346 FunFam Squamosa promoter-binding-like protein 14 65 135 - -
Arst6g03016 346 SUPERFAMILY SBT domain 73 153 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g03016 Arst-Chr6 95544570 95547542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g03016 74 197 SBP-box Gene Family AT5G50670 57.143 8.57e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Arst6g03016 SBP 2.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g03016 - - gmx:100798317 437.573