Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g02923 ATGGTTTCGACTAGTCTAGTCCAGAGTACTGGCAGCTGTTTCCTTAGCCGTTCATTGTCTTCAGTCACACTCCACACGTCAAGCCGCATACACACTATTCATTCTTTCCTTCTTCCTTTCTGCCCCCATTCTTATATAAGCGTTGATGTTTCTCTCATACACCAAACAGAAAACATTAAAACACCACTCTCACAATCGATGGAGAGCGACACGCTTCTTCCTCACACCACCGTTTCTTGGACCGAACACAGCAATGACATTGGAATTTCCATGAATGCCCCTCTCACTTCCTTCAAATCCATACTCCAACCTCCTCCAATTACCATAAACCCCTTCCCGTTCCCACAACAACATACCGCACCCACTCTCACTACTACTGCTGATGATGACAACTTTCTCACACACCAAAACATGGACTCCAACAATCCTTTTGATAATGCCTTCGATTTGGGACCTGACACCGCTTTCTTCTTCTCCGGGAACCATTCTTCTCAAACTGGCTCGCCTGACATGAGTTCCGGTACCGAATTCCCGCCGGCGACTCGGCTGCTCCCGGCGGGGGCTACCGACGATGATCCCATGGCGCTGGGTGCTGGATTTGGTGCCTCCGCTGCGTTTGAAATGGAAGCAGTTGGTGGCTCTGGAAACGCTCTGTTTTCGAGCAGGGGAAAGGGATTGGAAGCTTTGGAAGTGAGTAATTTGAAGAGGGTGCAGGAAGTTGAAGAAGCTAGCAATGAGGGTTCAATGTGGAATTCTGAAGAGGATGATGAGAGAACTGATGAGGTGGTGGTCGAGGAGAGTGGGAAGAAGAAGAAGAAGGGGATGCCGTCCAAAAATCTTATGGCGGAGAGGCGGCGAAGGAAGAAGCTCAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCAAATATTAGCAAGATGGACAGAGTTTCGATACTTGGAGATGCAATTGACTACATGAAGGAGTTACAGCAGCGGGTCAATGATCTTCAAAATGAACTGGAGTCAACTCCAACTAGCTGTTCGCCATCATCTTCCACCAGCATTCAACCTTTGACACCCACACTGCAAACCCTTCCATGCCGGGTGAAGGAAGAACTGTGTCCGATGCCAATCCCAGGAAACCAAACAGCAAAGGTGGAAGTTAAGGTAAGGGACGGCAAAGCTGTCAACATTCACATGTTTTGTAGCCGCCGACCAGGTCTTCTGGTCTCTACAATGCAGGCTCTGGATAACTTCGGATTAGATGTTCAGCAAGCTGTTATTAGCTGCTTCAATGGTTTTGCTTTAGACATCTTCAAAGCTGAGCAATGCAGAGAAGGGCAGGATGTGCTTCCTGAGGAAATCAAAGCAGTTCTGCTGGATTTAGCAGGATCCAAATAA 1383 0.4794 MVSTSLVQSTGSCFLSRSLSSVTLHTSSRIHTIHSFLLPFCPHSYISVDVSLIHQTENIKTPLSQSMESDTLLPHTTVSWTEHSNDIGISMNAPLTSFKSILQPPPITINPFPFPQQHTAPTLTTTADDDNFLTHQNMDSFAPEHSFFTPKASFFNNNPFDNAFDLGPDTAFFFSGNHSSQTGSPDMSSGTEFPPATRLLPAGATDDDPMALGAGFGASAAFEMEAVGGSGNALFSSRGKGLEALEVSNLKRVQEVEEASNEGSMWNSEEDDERTDEVVVEESGKKKKKGMPSKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRVSILGDAIDYMKELQQRVNDLQNELESTPTSCSPSSSTSIQPLTPTLQTLPCRVKEELCPMPIPGNQTAKVEVKVRDGKAVNIHMFCSRRPGLLVSTMQALDNFGLDVQQAVISCFNGFALDIFKAEQCREGQDVLPEEIKAVLLDLAGSK 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g02923 476 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 170 474 - -
Arst6g02923 476 Gene3D - 280 354 IPR036638 GO:0046983
Arst6g02923 476 Coils Coil 329 356 - -
Arst6g02923 476 MobiDBLite consensus disorder prediction 278 295 - -
Arst6g02923 476 MobiDBLite consensus disorder prediction 258 295 - -
Arst6g02923 476 Pfam Helix-loop-helix DNA-binding domain 297 340 IPR011598 GO:0046983
Arst6g02923 476 SMART finulus 296 345 IPR011598 GO:0046983
Arst6g02923 476 ProSiteProfiles ACT domain profile. 407 476 IPR002912 -
Arst6g02923 476 CDD ACT_UUR-ACR-like 408 449 - -
Arst6g02923 476 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 293 359 IPR036638 GO:0046983
Arst6g02923 476 CDD bHLH_AtAMS_like 293 351 - -
Arst6g02923 476 FunFam BHLH transcription factor 286 354 - -
Arst6g02923 476 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 290 339 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g02923 Arst-Chr6 92920097 92929015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g02923 158 452 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 51.163 6.09e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst6g02923 HLH 5.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g02923 - - ahf:112697118 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g02923 6 92920097 92929015 Arst6g02923 6 92920097 92929015 ECH