LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst6g02808	ATGGTCCGTGCTATAAAGGCTGCAATTGGTGATGGGGTGTTGACTTTCATGTGGGTGTTCTGTTCCTCCATGTTGGGGATAGCTTCAAGCTCCATAACAAGATTTCTTGACATTCGGCACCTCCATTACAATGGCTTCCCTTACCCTTCATTCCTTGTCACAACTTTCCTTGTTTTCGTACTTGTCTTTGTGTTCACCATCATTGGCAATGCCTTGGGTGGTGCCAGCTTCAATCCCACTGGCACTGCTGCGTTCTATGCTATTGGTCTTGGCTCTGACTCACTCTTCTCCATGGCTCTGCGCTTCCCTGCCCAGGCTCTTGGTGCTGCTGGTGGAGCTTTGGCAATTATGGAGATAATTCCTTCAAAATACAAACACATGATGGGAGGCCCTTCATTGAAAGTGGATCTGCACACCGGTGCTGTTGTTGAGGGAGTGTTGACTTTTGTGATCACTTTTGCTGTGCTCTACATAATCCTCAAGGGCCCTCGTAGTGACTTGCTCAAGACTTGGTTGCTCGCCATGTCGACTGTCGCACTAGTCATGGTTGGATCGGCTTACACCGGTCCATCCATGAATCCTGCCAATGCGTTTGGTTGGGCATACCTAAATAACTGGCACAACACATGGGATCAATTCTATGTATACTGGATCTGGCCCTTCGCCGGAGCAATATTTGCCGCATGGTTTTTCCGCGCCATCTTCCCCCCACCAGAAGCTACACAGGAGAAGAAACAGAAGAAAGCATGA	750	0.488	MVRAIKAAIGDGVLTFMWVFCSSMLGIASSSITRFLDIRHLHYNGFPYPSFLVTTFLVFVLVFVFTIIGNALGGASFNPTGTAAFYAIGLGSDSLFSMALRFPAQALGAAGGALAIMEIIPSKYKHMMGGPSLKVDLHTGAVVEGVLTFVITFAVLYIILKGPRSDLLKTWLLAMSTVALVMVGSAYTGPSMNPANAFGWAYLNNWHNTWDQFYVYWIWPFAGAIFAAWFFRAIFPPPEATQEKKQKKA	249

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst6g02808	249	PRINTS	Major intrinsic protein family signature	214	234	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Arst6g02808	249	PRINTS	Major intrinsic protein family signature	58	82	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Arst6g02808	249	PRINTS	Major intrinsic protein family signature	143	161	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Arst6g02808	249	PRINTS	Major intrinsic protein family signature	174	196	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Arst6g02808	249	PRINTS	Major intrinsic protein family signature	6	25	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Arst6g02808	249	PRINTS	Major intrinsic protein family signature	97	116	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Arst6g02808	249	PANTHER	AQUAPORIN SIP1-1	4	246	IPR044222	GO:0015250
	Arst6g02808	249	SUPERFAMILY	Aquaporin-like	4	244	IPR023271	-
	Arst6g02808	249	Pfam	Major intrinsic protein	4	230	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Arst6g02808	249	Gene3D	Glycerol uptake facilitator protein.	2	248	IPR023271	-
	Arst6g02808	249	FunFam	Aquaporin SIP1-1	2	248	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst6g02808	Arst-Chr6	89438424	89442399	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst6g02808	4	249	Major Intrinsic Protein MIP	AT5G18290	55.466	8.34e-82	243

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst6g02808	K09875		-	gmx:100792787	384.415

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Arst6g02808	6	89438424	89442399	Arst6g02808	6	89438424	89442399	ECH
	Arst6g02808	6	89438424	89442399	Arst10g03569	10	103562020	103564458	PCT