Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g02728 ATGTTCCCGATGGAAATTCATTTCCAGCAACCAAATCTTGAGCATAATAACAAAAGTGACAAGAAGAATCCAGGAATTGGGATCACCAAAGGAAACAAATTCAAAGGAAGAAGCAAAACCAACAACAACAACACTACAAACAAATTTGTTGGAGTGAGGCAGAGGCCTTCAGGGAGATGGGTGGCAGAGATCAAGGACACAACACAAAAGATAAGAATGTGGCTCGGAACCTTCGAGACGGCTGAAGAGGCGGCCAGAGCCTACGACGAAGCCGCCTGCCTCCTCCGCGGATCAAACACTCGAACTAACTTCATCACTCATGTCTCCACGGATTCTCCCCTGGCTTCACGCATCAGGAACCTTCTCAACGACAAAAAAGGCATCAAAAAACAAGAAAATAATGTTGTTTCTTGCGCCCCAAGAATCCTTGGTAGTACTAGCTCAAGTTCAACAAACAATGATAAAATTGAGAACTCTGTTCCACAAGTAGTGCGTGATGATGCTTATAAACCGGACTTGAGCAGCTGCGAGATGAATCCACAACAAACTAATAGTTTCTGGTCGGATTTCGGACCCATATTCGACCGCCTTCCGTTTGCTAATCATTTACTGGACGCGTCCAAGATCGACGGGCTTATTACTGGCGGCCCAACTGACATGGAGCTTCTGGAATTTGAAAGAATGAAGGTTGAAAGACAAATTTCAGCTTCACTTTATGCCATTAATGGAGTTCACGAGTACATGGAAACTCTTCAGGAATCTAATAACGAACCTATTTGGGATCTTCCACCTTTGTGCTCCTTATTCTGCTAA 813 0.4416 MFPMEIHFQQPNLEHNNKSDKKNPGIGITKGNKFKGRSKTNNNNTTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSTDSPLASRIRNLLNDKKGIKKQENNVVSCAPRILGSTSSSSTNNDKIENSVPQVVRDDAYKPDLSSCEMNPQQTNSFWSDFGPIFDRLPFANHLLDASKIDGLITGGPTDMELLEFERMKVERQISASLYAINGVHEYMETLQESNNEPIWDLPPLCSLFC 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g02728 270 FunFam ethylene-responsive transcription factor RAP2-11 47 106 - -
Arst6g02728 270 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 234 - -
Arst6g02728 270 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Arst6g02728 270 Gene3D AP2/ERF domain 47 106 IPR036955 GO:0003700|GO:0006355
Arst6g02728 270 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Arst6g02728 270 MobiDBLite consensus disorder prediction 1 48 - -
Arst6g02728 270 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Arst6g02728 270 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Arst6g02728 270 MobiDBLite consensus disorder prediction 34 48 - -
Arst6g02728 270 CDD AP2 48 104 IPR001471 GO:0003700|GO:0006355
Arst6g02728 270 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Arst6g02728 270 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g02728 Arst-Chr6 87317234 87318438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g02728 33 270 AP2-EREBP Transcription Factor Family AT5G19790 44.664 7.68e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Arst6g02728 AP2 5.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g02728 K09286 - gmx:100796898 313.923