LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst6g02558	ATGGCGACAAGAAAGGAAGAAGAGAGGAACGAGAAAATCATCAGAGGTCTTATGAAGCTTCCGCCCAATCGAAAATGCATCAACTGTAACAGTCTGGGCCCGCAATATGTTTGTACCAACTTTTGGACCTTCGTTTGCATGACTTGCAGTGGAATCCATCGTGAGTTTACCCATCGTGTGAAGTCTGTATCTATGGCAAAGTTCACATCACAGGAAGTTGATTCTCTTCAGAATGCGGGTAACCAGCGTGCACGGGAAATATATTTGAAAAATTGGGACTTCCAGAGGCAACGGCTGCCAGATAGCAGCAATGTCGATAAAATAAGGGAGTTTATAAGGCACGTATACGTCGATCGAAGATATGCTGCAACCAAATCTTCTGACAAGCCTCCAAGAGATATGCAGAACCCTAGAATCAATGAAGATGATACACGGCGTGCTAGTTCTTATCACTCCTATTCACAAAGCCCTCCATATGATTACCAATATGAAGATCGACGGTATGGGAAACAAGCAGCTGCATTGACCAGGAAGCCTGGTTCAGATAAAGTTCGCTATGAAGGAAAGATGAGTAGTATTATCTATAGTCCTGGACGCTTCAGTGATCATGCCTATGAGGATAGATTTGCCAATGAGGGATCTGGTCCGAGAATTTCTGACTTTTCTGTGTCCAGTGGGGGTCACCATTCAAGTGAAGATGTCTGGGCTTTTGCAAGGAATACATCTCTGGAAACTAATGCTAAGAGAGATATGGAAGGAATTCGGCTTCCGCAGAGGACTGCTTCACTGGGATCAATGGACAGCAACCTGTCATCTTTCAGATCTCACAATTCTGGTGGTTTAGTTGATTTTTTCTCTGAACCTGTCCAAGCTTTTGAACCGCTACAGACTAAAGTTTCTTGTGTTCCCCAACCACCTGGTCCAGCAGGTTCTACTAGCTCTGATATTTCCAACACACCTGTTGCAGCAGAACCATCCATTGATCTTTTTCAGTTGCCAGGAGCACCCTCTCAGTCTACATCAGTGGATCTGTTTCAATCAGCTGTTTTGTCTGCAGTTCCATATTCCAATGAGAGTCAACCAACACAAACTTCCCAACCTTCATCAGTTGACTTTTTTGCAGACCTTTCTCAGCAGCCATCAACTGCAACCTCAGATGAAAAGTCATTGGAGTTATCTGCCCCTAAAAATGAAGGTTGGGCAACATTTGATATGCCTCAGTACACAGCATCTACTGCAAAAGTTGAAACTCCAGCAGTACTGCCATCAGTTGCTGACACATTGCAGGACAGATTTGATCCATTCTTGAACTTGAATGGAAATATGCAATGGCCTTCATTTGAAACTTCTGGTGTTAGTGTTCCTTCTTCAGTTACATCTAATGTATGGCATGATGGTGCATGGAATGGAGAAGAACAAGTTTCTGTGACAGCAACAAGCACTCAATCTGAACAGCCTTGGAGTGCATTTGAAGATTCTGTTACCCCGGCTTCTGCAGATGGCCTTAATCAGGGATTACAACTGCAAAATCTTCCATCAACTGATGATCAATGTTTAGATTTAAGAGCTTCTGAGGGGTGCAATGAAGGTGGGATGCAAGGCATTGCCCCTATTGGCGGGTTTGATGATCATGAAATCTCATCAAATTTTAGTGGTGGCTCAGCATATCCTCCCTCTGCAATTCCCCCTATGGGAGAGAGTCAACCTAATGGAAACAGTCATAAATCAACTAATCCATTTGATTTTCTTGATGATGCTGATGTATCAGATGTAGAGCACAGTAATATGTTTCTTGATCTTAGCTCATTGCAAGCTGCTCTGCCCGATGCACAGTTACAACCTACTTTCCATAGTGGTATTGCCGAACCATGGCTTCCTCAAAATTCAGTTAACTCCTACATCTCCTCTGCTGGACAAGGTGGTGGTTTGACATTCTTGGCTGCTCAACCACCAAGTTCTCAAATATCGAATATCCAGACGCAGGAACCGGTTGCATCTTTTGGGGGAAATCCTTTTGCATAA	2022	0.4362	MATRKEEERNEKIIRGLMKLPPNRKCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMAKFTSQEVDSLQNAGNQRAREIYLKNWDFQRQRLPDSSNVDKIREFIRHVYVDRRYAATKSSDKPPRDMQNPRINEDDTRRASSYHSYSQSPPYDYQYEDRRYGKQAAALTRKPGSDKVRYEGKMSSIIYSPGRFSDHAYEDRFANEGSGPRISDFSVSSGGHHSSEDVWAFARNTSLETNAKRDMEGIRLPQRTASLGSMDSNLSSFRSHNSGGLVDFFSEPVQAFEPLQTKVSCVPQPPGPAGSTSSDISNTPVAAEPSIDLFQLPGAPSQSTSVDLFQSAVLSAVPYSNESQPTQTSQPSSVDFFADLSQQPSTATSDEKSLELSAPKNEGWATFDMPQYTASTAKVETPAVLPSVADTLQDRFDPFLNLNGNMQWPSFETSGVSVPSSVTSNVWHDGAWNGEEQVSVTATSTQSEQPWSAFEDSVTPASADGLNQGLQLQNLPSTDDQCLDLRASEGCNEGGMQGIAPIGGFDDHEISSNFSGGSAYPPSAIPPMGESQPNGNSHKSTNPFDFLDDADVSDVEHSNMFLDLSSLQAALPDAQLQPTFHSGIAEPWLPQNSVNSYISSAGQGGGLTFLAAQPPSSQISNIQTQEPVASFGGNPFA	673

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst6g02558	673	SUPERFAMILY	ArfGap/RecO-like zinc finger	9	122	IPR037278	-
	Arst6g02558	673	PRINTS	HIV Rev interacting protein signature	23	42	IPR001164	GO:0005096
	Arst6g02558	673	PRINTS	HIV Rev interacting protein signature	60	81	IPR001164	GO:0005096
	Arst6g02558	673	PRINTS	HIV Rev interacting protein signature	42	59	IPR001164	GO:0005096
	Arst6g02558	673	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	11	129	IPR001164	GO:0005096
	Arst6g02558	673	MobiDBLite	consensus disorder prediction	122	148	-	-
	Arst6g02558	673	PANTHER	ARFGAP/RECO-RELATED	1	673	IPR044820	GO:0005096
	Arst6g02558	673	CDD	ArfGap_AGFG	11	123	-	-
	Arst6g02558	673	MobiDBLite	consensus disorder prediction	122	161	-	-
	Arst6g02558	673	SMART	arf_gap_3	11	129	IPR001164	GO:0005096
	Arst6g02558	673	FunFam	Arf-GAP domain and FG repeat-containing protein 1	1	134	-	-
	Arst6g02558	673	Gene3D	Arf GTPase activating protein	1	132	IPR038508	-
	Arst6g02558	673	Pfam	Putative GTPase activating protein for Arf	12	123	IPR001164	GO:0005096

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst6g02558	Arst-Chr6	81913310	81920278	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst6g02558	14	116	C2H2 Transcription Factor Family	AT4G05330	34.211	9.86e-12	65.1