Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g02501 ATGGGCAAGAAGCGGAAGGTTGCACCCAAATCATCTCAAACCGTTGAGCCCCCGCCCAAGCAGCACCAACCTGAACCTCAACAGGAATACGAAGAGGTTGAGGAAGAGGTAGAAGAAGAGGTCGAAGAAGAGGAGGAGGTAGAGGAAGAAGAGGAAGAGGAGGAGGAAGAAGAAGAAGAACAAGAAGGAGGTAACGAACAAAAGCAACAACAAGAGGACGAAGACGACGACCCCATTCCGAAGCTTCTAGAACCTTTTGGTAAGGACCAGATCTTGAGTCTTCTCTGCGAAGCGGCCGCCAAGCACCGCGACGTGGCCGATCGAATCCGTCGCGTGGCCGACGAGGACGCTGTCCACCGGAAGATCTTCGTCCACGGCCTTGGCTGGGACACCACCGCCGAGACCCTCATCAGTGCGTTCCGCCAGTACGGCGAGATCGAGGACTGCAAGGCCGTCACCGATAAGATCTCCGGCAAGTCCAAGGGCTACGGATTCATCCTCTTCAAGACCCGCCGCGGCGCCCGCAATGCCCTCAAGCAGCCGCAGAAGAAGATCGGTAACCGCATGACAGCGTGCCAGCTGGCATCCATAGGCCCCGTCCAGCAGCCGGCACAGCAGCCTGCTGCCGCGGCCACCTCGTCAGGGCCGGCAGTCTCCGAATACACGCAGAGAAAGATCTATGTGAGCAACGTTGGGTCCGAATTGGACCCGCAGAAGCTGATGGCGTTCTTCTCGAGGTTCGGTGAGATCGAGGAAGGGCCATTGGGGCTCGACAAGGTCACTGGGAAGCCAAAGGGGTTCTGTTTGTTCGTTTACAAGAGCGTTGATAGTGCGAAGAGGGCGTTGGAGGAGCCTCACAAGGAATTTGAGGGACATGTGTTGCATTGCCAGAAGGCCATTGATGGACCGAAGCAAGGGAGGATGCAGCTGCAGCACAACGTTCCAAGGACGCAGTTTCAGAGGAACGACAACGCAGGGTTTGGTGCTGGTGTTGGTGGTGGCGTTGGTAACAATGTGCAGGGGCATTTGATGGCGCCAGCGGCTGCCGCAGCCAACCCTTTAGGGGTGAACCAAGCAGCTGTGCAGCCGCTGAATCCGGCACTCGGGCAGGCATTGACGGCCCTGCTTACTCAGCAGGGTGCTTCGTTGGGGCTCACCAATTTGTTGGGAGGTTTGGGATCAACTGCAGGGGCTGTTAATTCAGGCGTTCCAGCGGCAGCAGCACACACGATGCAGGGTGGTTACAGTGCTCAGCAGAATATAAGCCCTGGTGTTATGAGCGCGTACGGGAGTCAGGTAGGGCTGCAGGCAGCTTACCCGAACCAGCAGGTCGGGCAGAGTGGCGGCTCTGGAAGAGCGCAACCTGGCGTGGGGCAGTATGGTGGTGTTGCTCCTTACATGGGCCACTAG 1410 0.5787 MGKKRKVAPKSSQTVEPPPKQHQPEPQQEYEEVEEEVEEEVEEEEEVEEEEEEEEEEEEEQEGGNEQKQQQEDEDDDPIPKLLEPFGKDQILSLLCEAAAKHRDVADRIRRVADEDAVHRKIFVHGLGWDTTAETLISAFRQYGEIEDCKAVTDKISGKSKGYGFILFKTRRGARNALKQPQKKIGNRMTACQLASIGPVQQPAQQPAAAATSSGPAVSEYTQRKIYVSNVGSELDPQKLMAFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSVDSAKRALEEPHKEFEGHVLHCQKAIDGPKQGRMQLQHNVPRTQFQRNDNAGFGAGVGGGVGNNVQGHLMAPAAAAANPLGVNQAAVQPLNPALGQALTALLTQQGASLGLTNLLGGLGSTAGAVNSGVPAAAAHTMQGGYSAQQNISPGVMSAYGSQVGLQAAYPNQQVGQSGGSGRAQPGVGQYGGVAPYMGH 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g02501 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Arst6g02501 469 MobiDBLite consensus disorder prediction 1 84 - -
Arst6g02501 469 FunFam UBP1-associated protein 2A 113 197 - -
Arst6g02501 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 307 IPR000504 GO:0003723
Arst6g02501 469 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 25 313 - -
Arst6g02501 469 Coils Coil 27 74 - -
Arst6g02501 469 Gene3D - 200 313 IPR012677 -
Arst6g02501 469 MobiDBLite consensus disorder prediction 29 63 - -
Arst6g02501 469 SUPERFAMILY RNA-binding domain, RBD 120 202 IPR035979 GO:0003676
Arst6g02501 469 SMART rrm1_1 225 297 IPR000504 GO:0003723
Arst6g02501 469 SMART rrm1_1 121 193 IPR000504 GO:0003723
Arst6g02501 469 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 188 IPR000504 GO:0003723
Arst6g02501 469 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 295 IPR000504 GO:0003723
Arst6g02501 469 MobiDBLite consensus disorder prediction 64 83 - -
Arst6g02501 469 Gene3D - 19 199 IPR012677 -
Arst6g02501 469 SUPERFAMILY RNA-binding domain, RBD 207 313 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g02501 Arst-Chr6 80343308 80345933 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g02501 223 303 C2H2 Transcription Factor Family AT2G19380 33.333 1.32e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g02501 K12741 - gmx:100784200 511.916