Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst6g02417 | ATGTCAACCATGTCAAACAACGTCTCTTCTTCCCCAGCAAACCAGCCTGATAAGAAGGGTAAAGAGAAAGTTAATTTTGATGAAATGAACAAGGACAAGCAGATTCTAGTCAACGAACCAAACGTTCCAAACAACATGAACAACAAGCGCAAAGCAATCATGTTAGGAGATGATCATGATCATCCTAATACCGATGGTTCTGCTGCTGTTACCGAAGATGGAAGTGATTCCACTAAAGAACAGGAGCCCAACTCTGACAAAACTCTCATTATTGGTAGCCAGAATTCACAAAAGAAGAAAATTTCATACAATTGCACCTTTTGTGACAAGAGCTTTTCTTCCGCACAAGCTCTTGGGGGTCACCAAAATGGTCACAGAATGGAGAGAATGCAACAGTCCCATAACAAAAATAGCAGTGTAAATGATGGGATCCAACTCTTAAATAACATGACCATGGGTGCGGGTATGAACTCATCATCGTCAACAAGCTCCATGGAGCTACCGTCTTCGCCAACCATCCCTTCTTTTAGGCCCTTCTTTAATGGGGAACCTAATATGATGATCATGGGATACAATAATAATATTATTAATAATGATTATCATCCTTATCATCATGGTTTATTCCAGAACAATGGAGGGAGACCATCAAACTTTTTCAGTCCTGGCCCTGTGGTTGGTGCAAATAACAATTTTGCATACCCTCGTGTTGGTTCTGCTTTTGATGCAGTGGGAGTTGGAAACGTTGGTGCATTTCAGCATCCATATGAATTTCAAACAAGAGGCCTCAATGATGCTGCATCAGTGAACCCTGGACCTGGTGGTACATCTCAGCATCCTCGTCCTGCTATGGCTGCTGTTGAGATTAGCAGAACTAGAATTGGGAATAACAACAACAATAATAACGGTGGTGTCGAAAGGCAGATTGTGAATGAGGCCTGTGAGACCCCACAGGGTGAATTTGAGTTTGTTTTGCTTCCATGTGCAGCAAGAAACAACGAGAATAATATGGTGGAGATTGACTTTGGTCTGGTTCCAAAGAAAGACGAAAATGGAGAAGCAAAAGAAAAAGCCGCGTCAGAGACTGATTGA | 1089 | 0.4197 | MSTMSNNVSSSPANQPDKKGKEKVNFDEMNKDKQILVNEPNVPNNMNNKRKAIMLGDDHDHPNTDGSAAVTEDGSDSTKEQEPNSDKTLIIGSQNSQKKKISYNCTFCDKSFSSAQALGGHQNGHRMERMQQSHNKNSSVNDGIQLLNNMTMGAGMNSSSSTSSMELPSSPTIPSFRPFFNGEPNMMIMGYNNNIINNDYHPYHHGLFQNNGGRPSNFFSPGPVVGANNNFAYPRVGSAFDAVGVGNVGAFQHPYEFQTRGLNDAASVNPGPGGTSQHPRPAMAAVEISRTRIGNNNNNNNGGVERQIVNEACETPQGEFEFVLLPCAARNNENNMVEIDFGLVPKKDENGEAKEKAASETD | 362 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst6g02417 | 362 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 103 | 130 | IPR013087 | - | |
| Arst6g02417 | 362 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Arst6g02417 | 362 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 105 | 125 | IPR013087 | - | |
| Arst6g02417 | 362 | MobiDBLite | consensus disorder prediction | 16 | 34 | - | - | |
| Arst6g02417 | 362 | Pfam | C2H2-type zinc finger | 103 | 126 | - | - | |
| Arst6g02417 | 362 | MobiDBLite | consensus disorder prediction | 1 | 93 | - | - | |
| Arst6g02417 | 362 | Gene3D | Classic Zinc Finger | 78 | 159 | - | - | |
| Arst6g02417 | 362 | MobiDBLite | consensus disorder prediction | 52 | 66 | - | - | |
| Arst6g02417 | 362 | SUPERFAMILY | beta-beta-alpha zinc fingers | 101 | 130 | IPR036236 | - | |
| Arst6g02417 | 362 | PANTHER | ZINC FINGER PROTEIN 5 | 74 | 253 | IPR044299 | GO:0010090 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst6g02417 | Arst-Chr6 | 76740059 | 76741360 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst6g02417 | 92 | 141 | C2H2 Transcription Factor Family | AT5G01860 | 44.000 | 2.67e-08 | 52.0 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Arst6g02417 | zf-C2H2_6 | 1.3e-06 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst6g02417 | - | - | adu:107494137 | 697.582 |