Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g02342 ATGTCATCATCAGAAACACCCCAACGGTGGACTCAGCAACAACAAGAAGAAGCAAAAGATAATATCAATGAAGATGAAATGAATAATAATAAGGAGCTGATGTTCGAGAAGGTTCTTACTCCAAGCGACGTTGGGATGCTCAACCGCCTCGTCGTCCCAAAGTCCCACGCGGAGGCGCATTTTCCGACCGGCGCCGACGGATACTCGGCCGAAGGGAAGGGCCTGCTTCTGAATTTCGAGGACCAATCGGGAAAACAATGGAAGTTCCGTTATTGCTATTGGAGCAGCAGCCAGAGCTATGTTCTCACCAAAGGATGGGGCCGCTACGTTAGAGAAAACCACCTTTCTGCTGGCGACGTCGTTTTGTTCAAGAGGCACCGCCTCCATCCAAATAATTTCTTTATTAGTTGGAGGGGCCGCGATGCTGGGACCATGCCTCCGGCGGCTAGAGGGAGGGGGAAGAGGAGGAAGAGGAGGGATGAGGTGTGGTGGTGA 495 0.5192 MSSSETPQRWTQQQQEEAKDNINEDEMNNNKELMFEKVLTPSDVGMLNRLVVPKSHAEAHFPTGADGYSAEGKGLLLNFEDQSGKQWKFRYCYWSSSQSYVLTKGWGRYVRENHLSAGDVVLFKRHRLHPNNFFISWRGRDAGTMPPAARGRGKRRKRRDEVWW 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g02342 164 Pfam B3 DNA binding domain 35 139 IPR003340 GO:0003677
Arst6g02342 164 CDD B3_DNA 34 127 IPR003340 GO:0003677
Arst6g02342 164 Gene3D - 23 146 IPR015300 -
Arst6g02342 164 MobiDBLite consensus disorder prediction 1 17 - -
Arst6g02342 164 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 8 145 IPR044800 GO:0003700
Arst6g02342 164 SMART B3_2 35 141 IPR003340 GO:0003677
Arst6g02342 164 MobiDBLite consensus disorder prediction 145 164 - -
Arst6g02342 164 ProSiteProfiles B3 DNA-binding domain profile. 35 141 IPR003340 GO:0003677
Arst6g02342 164 SUPERFAMILY DNA-binding pseudobarrel domain 31 137 IPR015300 -
Arst6g02342 164 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g02342 Arst-Chr6 71786494 71787117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g02342 25 140 RAV Transcription Factor Family AT2G36080 64.655 3.42e-47 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Arst6g02342 B3 2.3e-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g02342 K09287 - adu:110272676 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g02342 6 71786494 71787117 Arst6g02342 6 71786494 71787117 ECH