Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g02339 ATGGCGGCTTTTCGGAGAATGATTAGCTTCGGATCGAACAGAACTTTGACTCCACCCTCTCTTCTCACTTTCCGCAGAGGAATCGCTTTCAAGCTCTTCGTTGGAGGATTGTCTGTGCACACGACGGAGAAAGGATTGACAGATGCTTTCTCTGATTGCGGACAAGTAATTGAAGCTAAAATTATAACAGACAGGGTATCGGAGAGATCTAAAGGGTTTGGGTTCGTCACCTTTGCTTCACGGGTTGAGGCTGCGAATGCCATTTCACAGATGAATGGGAAGGCACTAAATGGCCGCGATATCTTTGTTGATTATGCGAAACCAACTTATTTCAAGAGTACTGGAATGCCCATTGCAAGAGGACCCCCTGAACTCCCCACAGTTGATAGTTGA 393 0.4631 MAAFRRMISFGSNRTLTPPSLLTFRRGIAFKLFVGGLSVHTTEKGLTDAFSDCGQVIEAKIITDRVSERSKGFGFVTFASRVEAANAISQMNGKALNGRDIFVDYAKPTYFKSTGMPIARGPPELPTVDS 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g02339 130 Gene3D - 23 113 IPR012677 -
Arst6g02339 130 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 101 IPR000504 GO:0003723
Arst6g02339 130 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Arst6g02339 130 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 27 110 - -
Arst6g02339 130 SUPERFAMILY RNA-binding domain, RBD 30 117 IPR035979 GO:0003676
Arst6g02339 130 SMART rrm1_1 31 104 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g02339 Arst-Chr6 71432126 71433684 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g02339 29 107 Eukaryotic Initiation Factors Gene Family AT2G23350 32.911 1.43e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g02339 - - pvu:PHAVU_001G192800g 170.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g02339 6 71432126 71433684 Arst6g02339 6 71432126 71433684 ECH