Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g02307 ATGCATAATATGCCTGGGACAAAGCAGAGTGATGAAACGGCCCAAAATCAAGAATCACCAGAGGGGCACAGTGAGCATGAAAAACCTACAGATTCTGATGAACAGGTAGACCTTGAAGGGGATAATGATCAAGAGGAGACCATGGAGGAAGAGGTTGAATATGAAGAAATAGAGGAAGAAGTCGAAGAGGAAGAAGAGGAAGAGGAGGAAGAGGAGGAAGAAGAAGAAGAGACTAAACCCTCAGATGGTGAAGAGGATATAGGAGTGGTAGACAATAAGGATGAAGATGAGAAAAAGAAACATGCAGAAGTTCTTGCACTTCCACCTCATGGGTCAGAGGTTTACATTGGTGGCATTCCTCACAAAGTTTCAGAAGAAGATTTGAGGGCCTTCTGTGAATCTGTGGGAGAAGTGTCAGAGGTTAGGATTATGAAAGGAAAAGATTCAGTTGAAGCAAAAGGTTATGCATTTGTGACCTTCAAGTCAAAGGAATTGGCATCTATGGCTATTGAGAAACTGAACAACACTGAATTTAAGGGAAGAAAAATAAGGTGCTCAACATCCCAAGCTAAGCATAAGTTGTTCATTGGTAATGTTCCTAGAAATTGGACTTTAGAAAATATGAAGAAGGTAGTCTCAGAAATTGGGCCTGGAGTTGTTGCTGTGGAGCTGTTGAAGGACCCACAGATTTCTGGCCGTAATAGGGGGTTTGCTTTTATTGAGTATTACAATCATGCTTGTGCAGAATATTCAAGGCAGAAGATGTCAAACCCAAAATTCAAACTAGACGACAATGCTCCAACTGTGAGTTGGGCTGACCCAAGGAATTCTGAATCATCTGCTGCGACTCAGGTAAAAGCAGTTTATGTAAAGAACCTTCCAGAGAATATTACTCAGGATCGTCTTAAGGCACTGTTTGAACATCATGGAAAGATCACAAAAGTGGTTGTCCCTCCTGCTAAAGCAGGACAAGAAAAGAGCAGGTTTGGGTTTGTGCACTTTGCTGAAAGGTCAAGTGCCATGAAAGCATACGTATCGTAGGCATTAAATTTTCTTGGATGGGCAGGGCAATCTCTGGAGTGTTCACTTGCAAAGCCACAAGCAGATCAGAAGTCATCCAGTACACTAAATTCACAGAAGTCTGTTGTACTTCCCACTTATCCACCTCAACTTGGTTATGGCATGGTTGGAGGTGCATATTCTGGTATTGGCACAGGATTTGGTCCTGCTGGGTTCACACAACCACTGATGTATGGTGCAGGAGCAACCGCAGCTGGCATGGCAATGATGCCAATGCTGTTACCAGATGGAAGGATTGGATATGTATTGCAACAGCCAGGGTTGCAACCACATACTCCTCCTCCGCCAGTATCCAGACATGGCAAGAGCAGCGGTGGTAGCTCAAGTAGTGGGAAACGTGGAAATGATAATAGCCATAACCGTGGCCGTGGCCGTGGTCGGTATCATCCCTACTAA 1476 0.4404 MHNMPGTKQSDETAQNQESPEGHSEHEKPTDSDEQVDLEGDNDQEETMEEEVEYEEIEEEVEEEEEEEEEEEEEEEETKPSDGEEDIGVVDNKDEDEKKKHAEVLALPPHGSEVYIGGIPHKVSEEDLRAFCESVGEVSEVRIMKGKDSVEAKGYAFVTFKSKELASMAIEKLNNTEFKGRKIRCSTSQAKHKLFIGNVPRNWTLENMKKVVSEIGPGVVAVELLKDPQISGRNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNSESSAATQVKAVYVKNLPENITQDRLKALFEHHGKITKVVVPPAKAGQEKSRFGFVHFAERSSAMKAYVSXALNFLGWAGQSLECSLAKPQADQKSSSTLNSQKSVVLPTYPPQLGYGMVGGAYSGIGTGFGPAGFTQPLMYGAGATAAGMAMMPMLLPDGRIGYVLQQPGLQPHTPPPPVSRHGKSSGGSSSSGKRGNDNSHNRGRGRGRYHPY 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g02307 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 366 IPR000504 GO:0003723
Arst6g02307 491 MobiDBLite consensus disorder prediction 18 35 - -
Arst6g02307 491 MobiDBLite consensus disorder prediction 443 491 - -
Arst6g02307 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 274 IPR000504 GO:0003723
Arst6g02307 491 SMART rrm1_1 113 186 IPR000504 GO:0003723
Arst6g02307 491 SMART rrm1_1 193 270 IPR000504 GO:0003723
Arst6g02307 491 SMART rrm1_1 287 362 IPR000504 GO:0003723
Arst6g02307 491 MobiDBLite consensus disorder prediction 1 17 - -
Arst6g02307 491 Gene3D - 34 192 IPR012677 -
Arst6g02307 491 CDD RRM_SF 114 186 - -
Arst6g02307 491 Gene3D - 193 273 IPR012677 -
Arst6g02307 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 260 IPR000504 GO:0003723
Arst6g02307 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 344 IPR000504 GO:0003723
Arst6g02307 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Arst6g02307 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
Arst6g02307 491 Coils Coil 44 79 - -
Arst6g02307 491 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 10 481 - -
Arst6g02307 491 MobiDBLite consensus disorder prediction 83 99 - -
Arst6g02307 491 Gene3D - 274 379 IPR012677 -
Arst6g02307 491 MobiDBLite consensus disorder prediction 461 475 - -
Arst6g02307 491 SUPERFAMILY RNA-binding domain, RBD 283 370 IPR035979 GO:0003676
Arst6g02307 491 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 193 273 - -
Arst6g02307 491 MobiDBLite consensus disorder prediction 36 82 - -
Arst6g02307 491 SUPERFAMILY RNA-binding domain, RBD 109 276 IPR035979 GO:0003676
Arst6g02307 491 MobiDBLite consensus disorder prediction 1 99 - -
Arst6g02307 491 SMART rrm2_1 113 186 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g02307 Arst-Chr6 69234098 69239075 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g02307 114 456 Eukaryotic Initiation Factors Gene Family AT4G34110 25.876 9.51e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g02307 K13161 - gmx:100798476 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g02307 6 69234098 69239075 Arst6g02307 6 69234098 69239075 ECH