Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g02185 ATGGCACTCCATGACATAGATGCTGCAGTTGAAAGCTTTAAAAATGCATTGGTCTTAGAGCCAAATGATGAGAGAATTTTGGGCAACCCAAACCAAAGTTTGAAGTTAAAAAGACAAGAAACTGAGAACTCTGAGTGCCACAGTGAAGATATTGAGGAAGAATCAGTGGGTGTTAAAAAGGCATGTCCAACACGAGGTGTTAAGAGAAGTCGTTCAGCCGAAGTACATAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGTGCATTGCAAGATCTCATACCAAACTGCAATAAGGTTTACTCTTCCATTTTCACTTTTGTTATGCAGACCAGAGAATTTTCATAA 360 0.3972 MALHDIDAAVESFKNALVLEPNDERILGNPNQSLKLKRQETENSECHSEDIEEESVGVKKACPTRGVKRSRSAEVHNLSERRRRDRINEKMRALQDLIPNCNKVYSSIFTFVMQTREFS 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g02185 119 Pfam Helix-loop-helix DNA-binding domain 75 99 IPR011598 GO:0046983
Arst6g02185 119 PANTHER TRANSCRIPTION FACTOR PIF3 25 104 IPR044273 GO:0003700|GO:0006355
Arst6g02185 119 MobiDBLite consensus disorder prediction 30 52 - -
Arst6g02185 119 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 105 IPR036638 GO:0046983
Arst6g02185 119 Gene3D - 64 112 IPR036638 GO:0046983
Arst6g02185 119 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 119 IPR011598 GO:0046983
Arst6g02185 119 MobiDBLite consensus disorder prediction 38 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g02185 Arst-Chr6 57282589 57285294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g02185 29 104 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 70.000 1.87e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst6g02185 HLH 9.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g02185 K12126 - adu:127748567 238.424