Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g02175 ATGAACATGGAGAGCACGCGTAGATCGTTCGATAGATCGAGAGAGCCGGGCGCCAAGAAGCCCCGATTGATCGACGAGCTCGACAGCAGTTCCAACCCCATTTCCCGACCGTTTTCTCAGCCGCGGCAACCGCCGTCCTCTGCGGTTACACCGTTGACTTCCGCCACCGCGAGGTTCCGAACTAACAGCGACAGGGACTTCGAAAGCAGCGACAGGTACCACCCGCAACCGCCACCGCACCAGGAGCTTGTATCTCAGTACAAGGCCGCGCTAGCTGAGCTCACTTTCAACTCGAAGCCAATAATTACGAACTTGACCATCATTGCAGGAGAGAACCTTTCTGCTGCGAAGGCCATTGCTGGCACCGTTTGTACCAACATTCTAGAGGTTCCAAATGAACAAAAGCTTCCATCTCTTTATCTCTTGGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAATACTTTGCTGCCAGACTACCTGAGGTATTCATCAAGGCATACAAACAGGTTGATCCACCTGTCCATTCAAGTATGAGGCATCTTTTTGGAACTTGGAAGGGATACTTTCCTCCGCAGACCCTTCAGATGATTGAAAAGGAACTTGGCTTCACACCTGCAGTCAATGGTTCGGCTTCTTCATCTGCTACACTCAGAAGTGAATCACAGTCACAACGCCCAGCTCATAGCATCCATGTGAATCCTAAGTATTTAGAACGACAGCGTCTTCAGCAGTCCAGCAGGATTAAAGGAGTAGCTAATGATACGACTAGAGCTATTTTGAACTCAAATGAGGATTCAGAGAGGTCAAGTAGAGTTTTGGGTGCTTCACGACCGTGGCTAGATCCTAGGATTAACATGCATGTATGTAGGCGTATTCAAAGAGATGCATATAACAATTCTGTTCCTGAGAAGAGTTTAGCTGAATCCTATGGGGCCATAAAAAATAGTTCTGGTATTTCAAGTATTGGAACAACTGGCAGTAGGGTTACTGAGCTGGGACATGATAAAACTTGGTATAAAGCAGGAATCAGCGTGGCAGAGAACACGTCTAATCAAAGTAATGGTTTCAGTTTGAAGCTTGGTTTTTCGAATCGTGAAGCACCAAAGTCGATGAACTTGGGTGCACATCATCAGCCAACACAAAACTTAACTAGCATACAGAGCAGTGTAGTGCCAGGTAGCTGGAAAAATTCTGAGGAAGAGGAATTCATGTGGGATGAAATGAACTCTGGAATGATTGGTGATGGTGCAGCCAGCATTGCCAACAACATGAATACAGAACCATGGATGGGTGGTGATGATGAGAATTTGGATGGAGATCAATCCCAAATCTTGCACCATGATAGAGAAATATCTACTGCTAGGAAACAATCATTTGCATCTGGGGGGCATTCATCATTGCCATGGCAATTGCAGGAGCAGAGATCGAATGAAAAGTTGAATCTGAGGCCAGGTCACTCGGAAGAATTGTTGTCAGCTTTAGGTTGCTTACCAGCTAATACAAGTTCTTTGGTTGTCAGGATGCCAAATCAGTCTTCCATGCCAAATGCAACCAAAGATATGTCTGAAACTATGGGACAAAAGCAATTTGATTCCATGGGAACAAAACCCACTTCTGTGCAGTCACCTTTGCAGCAGCAGTCTGCATCATTGCCTGTAACAAAGCTCCACCCTCATCCAACACAAAATTTGTTGGAGCAAGACAATGGGAAGGCTTCTAAAACATCACAATTTCTGGGAGATCTGCAGAGACAATACATTAGAGATCAACCAGCTGCCCTTCCTCCCAATGCTCAAGTTGGTCGTTTGCATAGATCTAGAGAAAAGGATTTGCATGGTCCTTTATCTTCAGAGACTTCTTTTCTGCCAAGGCATCAGCAGCAGCCACTGGTCTCTTCCCAGACTGAAGTTATTGCAAAAACTAAGCCTCTCCACTCTAAAGTCTCTTTGGCCAGTGAAAGTTCAGAACAATCAAAAAGTAGTTTGTCAGCTGCAACTGTGCAGACTAGATTCCTCAACAAATCAATTACAAATAGTTTTCCTGGTACAAGTAGTAGTCTAGTTACAAAGAATCTTCCATCTGACTTGGGGGTTTGCCCAGCTCTATCAGGTAGACCCTCGTCTGCCACATTAATTTCTTCGGTATCTGCAGTTGCATCACCGTCAACATTAGTTCCTCCAGATGACGATTCTTCTATTCTGGATAACATATCACAAGCAAATACTGGACAGAAACCAAAGGTCTCTACAAAATTACCAACTTCCTCTAACATGAGCACTGTGTCAGCTCCAACCTCAACCGCTACAAAAAACAATTCCTTGAATCCCATTGCAAACCTTTTAAGCTCACTGGTTGCAAAAGGTTTGATATCTACAGATTCGGAGTCATCGACTAAGGTACCAACAGAGGCATTGGTTCAATTGGAAGCCCGTACTGAAAGCATTACTGCCAGTAGCTCATTGCCAGTTCCTTCAGTTACTGGTTCCACAGTTCTCCCAGTAACATCCTCTAAAGTTGTGGAAGATGATGCAAAAGCCTCCCTGATCGTAAGTCAATCAACCAACACCAAAATAAGGAATATCATCGGCTTTGATTTTAAGCCTGATATAGTTCGAGAGATGCATCCCACTGTAATCAAGGGATTATTGGATGATAGTCAGCATCATTGCAGATTTTGTGGTATTAAGCTTAAACAGGAAGAACAGTTCAACAAACACTTGGAGTGGCATTTTGCACGAGAAAGAGAGCAACATGGTCTAATTAGAGCATCCAGAAAATGGTATGAGAATTGGTTTCTGTCTGAGCCTAGTGATTCTGTAGACGATTATTGCGAGGAAACAGACAGGAGTCCATTTGATGCTATGGTTCCAGCTGATGAAAGCCAGTGCTTGTGTGTATTGTGTGGTGATCTGTTTGAAGATGTGTACTGTCAAGAGAGGGATGAATGGATGTTCGAAGGTGCTGTTTACATAAACAACTTAGATAGAAATGGTGAGATGGAAAGTAGAAATGTGGGGCCAATTGTTCATGCTAAATGTTTATCTGAGAACTCAGTAGCTGGCGGCATCAAGATGGAACAGGACTGA 3093 0.4403 MNMESTRRSFDRSREPGAKKPRLIDELDSSSNPISRPFSQPRQPPSSAVTPLTSATARFRTNSDRDFESSDRYHPQPPPHQELVSQYKAALAELTFNSKPIITNLTIIAGENLSAAKAIAGTVCTNILEVPNEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFIKAYKQVDPPVHSSMRHLFGTWKGYFPPQTLQMIEKELGFTPAVNGSASSSATLRSESQSQRPAHSIHVNPKYLERQRLQQSSRIKGVANDTTRAILNSNEDSERSSRVLGASRPWLDPRINMHVCRRIQRDAYNNSVPEKSLAESYGAIKNSSGISSIGTTGSRVTELGHDKTWYKAGISVAENTSNQSNGFSLKLGFSNREAPKSMNLGAHHQPTQNLTSIQSSVVPGSWKNSEEEEFMWDEMNSGMIGDGAASIANNMNTEPWMGGDDENLDGDQSQILHHDREISTARKQSFASGGHSSLPWQLQEQRSNEKLNLRPGHSEELLSALGCLPANTSSLVVRMPNQSSMPNATKDMSETMGQKQFDSMGTKPTSVQSPLQQQSASLPVTKLHPHPTQNLLEQDNGKASKTSQFLGDLQRQYIRDQPAALPPNAQVGRLHRSREKDLHGPLSSETSFLPRHQQQPLVSSQTEVIAKTKPLHSKVSLASESSEQSKSSLSAATVQTRFLNKSITNSFPGTSSSLVTKNLPSDLGVCPALSGRPSSATLISSVSAVASPSTLVPPDDDSSILDNISQANTGQKPKVSTKLPTSSNMSTVSAPTSTATKNNSLNPIANLLSSLVAKGLISTDSESSTKVPTEALVQLEARTESITASSSLPVPSVTGSTVLPVTSSKVVEDDAKASLIVSQSTNTKIRNIIGFDFKPDIVREMHPTVIKGLLDDSQHHCRFCGIKLKQEEQFNKHLEWHFAREREQHGLIRASRKWYENWFLSEPSDSVDDYCEETDRSPFDAMVPADESQCLCVLCGDLFEDVYCQERDEWMFEGAVYINNLDRNGEMESRNVGPIVHAKCLSENSVAGGIKMEQD 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g02175 1030 MobiDBLite consensus disorder prediction 607 630 - -
Arst6g02175 1030 MobiDBLite consensus disorder prediction 61 75 - -
Arst6g02175 1030 Gene3D - 76 204 IPR008942 -
Arst6g02175 1030 MobiDBLite consensus disorder prediction 28 60 - -
Arst6g02175 1030 MobiDBLite consensus disorder prediction 214 238 - -
Arst6g02175 1030 MobiDBLite consensus disorder prediction 722 770 - -
Arst6g02175 1030 SUPERFAMILY ENTH/VHS domain 79 208 IPR008942 -
Arst6g02175 1030 MobiDBLite consensus disorder prediction 214 231 - -
Arst6g02175 1030 SMART 558neu5 82 204 IPR006569 -
Arst6g02175 1030 MobiDBLite consensus disorder prediction 1 26 - -
Arst6g02175 1030 Pfam CID domain 88 198 IPR006569 -
Arst6g02175 1030 MobiDBLite consensus disorder prediction 1 80 - -
Arst6g02175 1030 MobiDBLite consensus disorder prediction 512 549 - -
Arst6g02175 1030 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 45 1021 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Arst6g02175 1030 ProSiteProfiles CID domain profile. 79 207 IPR006569 -
Arst6g02175 1030 FunFam polyadenylation and cleavage factor homolog 4 76 204 - -
Arst6g02175 1030 CDD CID_Pcf11 84 196 IPR047415 -
Arst6g02175 1030 ProSitePatterns Zinc finger C2H2 type domain signature. 892 912 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g02175 Arst-Chr6 55630076 55636714 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g02175 77 241 C2H2 Transcription Factor Family AT4G04885 57.576 7.39e-53 197