Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g02174 ATGAACATGGAGAGCACGCGTAGATCGTTCGATAGATCGAGAGAGCCGGGCGCCAAGAAGCCCCGATTGATCGACGAGCTCGACAGCAGTTCCAACCCCATTTCCCGACCGTTTTCTCAGCCGCGGCAACCGCCGTCCTCTGCGGTTACACCGTTGACTTCCGCCACCGCGAGGTTCCGAACTAACAGCGACAGGGACTTCGAAAGCAGCGACAGGTACCACCCGCAACCGCCACCGCACCAGGAGCTTGTATCTCAGTACAAGGCCGCGCTAGCTGAGCTCACTTTCAACTCGAAGCCAATAATTACGAACTTGACCATCATTGCAGGAGAGAACCTTTCTGCTGCGAAGGCCATTGCTGGCACCGTTTGTACCAACATTCTAGAGGTTCCAAATGAACAAAAGCTTCCATCTCTTTATCTCTTGGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAATACTTTGCTGCCAGACTACCTGAGGTATTCATCAAGGCATACAAACAGGTTGATCCACCTGTCCATTCAAGTATGAGGCATCTTTTTGGAACTTGGAAGGGATACTTTCCTCCGCAGACCCTTCAGATGATTGAAAAGGAACTTGGCTTCACACCTGCAGTCAATGGTTCGGCTTCTTCATCTGCTACACTCAGAAGTGAATCACAGTCACAACGCCCAGCTCATAGCATCCATGTGAATCCTAAGTATTTAGAACGACAGCGTCTTCAGCAGTCCAGCAGGATTAAAGGAGTAGCTAATGATACGACTAGAGCTATTTTGAACTCAAATGAGGATTCAGAGAGGTCAAGTAGAGTTTTGGGTGCTTCACGACCGTGGCTAGATCCTAGGATTAACATGCATCGTATTCAAAGAGATGCATATAACAATTCTGTTCCTGAGAAGAGTTTAGCTGAATCCTATGGGGCCATAAAAAATAGTTCTGGTATTTCAAGTATTGGAACAACTGGCAGTAGGGTTACTGAGCTGGGACATGATAAAACTTGGTATAAAGCAGGAATCAGCGTGGCAGAGAACACGTCTAATCAAAGTAATGGTTTCAGTTTGAAGCTTGGTTTTTCGAATCGTGAAGCACCAAAGTCGATGAACTTGGGTGCACATCATCAGCCAACACAAAACTTAACTAGCATACAGAGCAGTGTAGTGCCAGGTAGCTGGAAAAATTCTGAGGAAGAGGAATTCATGTGGGATGAAATGAACTCTGGAATGATTGGTGATGGTGCAGCCAGCATTGCCAACAACATGAATACAGAACCATGGATGGGTGGTGATGATGAGAATTTGGATGGAGATCAATCCCAAATCTTGCACCATGATAGAGAAATATCTACTGCTAGGAAACAATCATTTGCATCTGGGGGGCATTCATCATTGCCATGGCAATTGCAGGAGCAGAGATCGAATGAAAAGTTGAATCTGAGGCCAGGTCACTCGGAAGAATTGTTGTCAGCTTTAGGTTGCTTACCAGCTAATACAAGTTCTTTGGTTGTCAGGATGCCAAATCAGTCTTCCATGCCAAATGCAACCAAAGATATGTCTGAAACTATGGGACAAAAGCAATTTGATTCCATGGGAACAAAACCCACTTCTGTGCAGTCACCTTTGCAGCAGCAGTCTGCATCATTGCCTGTAACAAAGCTCCACCCTCATCCAACACAAAATTTGTTGGAGCAAGACAATGGGAAGGCTTCTAAAACATCACAATTTCTGGGAGATCTGCAGAGACAATACATTAGAGATCAACCAGCTGCCCTTCCTCCCAATGCTCAAGTTGGTCGTTTGCATAGATCTAGAGAAAAGGATTTGCATGGTCCTTTATCTTCAGAGACTTCTTTTCTGCCAAGGCATCAGCAGCAGCCACTGGTCTCTTCCCAGACTGAAGTTATTGCAAAAACTAAGCCTCTCCACTCTAAAGTCTCTTTGGCCAGTGAAAGTTCAGAACAATCAAAAAGTAGTTTGTCAGCTGCAACTGTGCAGACTAGATTCCTCAACAAATCAATTACAAATAGTTTTCCTGGTACAAGTAGTAGTCTAGTTACAAAGAATCTTCCATCTGACTTGGGGGTTTGCCCAGCTCTATCAGGTAGACCCTCGTCTGCCACATTAATTTCTTCGGTATCTGCAGTTGCATCACCGTCAACATTAGTTCCTCCAGATGACGATTCTTCTATTCTGGATAACATATCACAAGCAAATACTGGACAGAAACCAAAGGTCTCTACAAAATTACCAACTTCCTCTAACATGAGCACTGTGTCAGCTCCAACCTCAACCGCTACAAAAAACAATTCCTTGAATCCCATTGCAAACCTTTTAAGCTCACTGGTTGCAAAAGGTTTGATATCTACAGATTCGGAGTCATCGACTAAGGTACCAACAGAGGCATTGGTTCAATTGGAAGCCCGTACTGAAAGCATTACTGCCAGTAGCTCATTGCCAGTTCCTTCAGTTACTGGTTCCACAGTTCTCCCAGTAACATCCTCTAAAGTTGTGGAAGATGATGCAAAAGCCTCCCTGATCGTAAGTCAATCAACCAACACCAAAATAAGGAATATCATCGGCTTTGATTTTAAGCCTGATATAGTTCGAGAGATGCATCCCACTGTAATCAAGGGATTATTGGATGATAGTCAGCATCATTGCAGATTTTGTGGTATTAAGCTTAAACAGGAAGAACAGTTCAACAAACACTTGGAGTGGCATTTTGCACGAGAAAGAGAGCAACATGGTCTAATTAGAGCATCCAGAAAATGGTATGAGAATTGGTTTCTGTCTGAGCCTAGTGATTCTGTAGACGATTATTGCGAGGAAACAGACAGGAGTCCATTTGATGCTATGGTTCCAGCTGATGAAAGCCAGTGCTTGTGTGTATTGTGTGGTGATCTGTTTGAAGATGTGTACTGTCAAGAGAGGGATGAATGGATGTTCGAAGGTGCTGTTTACATAAACAACTTAGATAGAAATGGTGAGATGGAAAGTAGAAATGTGGGGCCAATTGTTCATGCTAAATGTTTATCTGAGAACTCAGTAGCTGGCGGCATCAAGATGGAACAGGACTGA 3084 0.4403 MNMESTRRSFDRSREPGAKKPRLIDELDSSSNPISRPFSQPRQPPSSAVTPLTSATARFRTNSDRDFESSDRYHPQPPPHQELVSQYKAALAELTFNSKPIITNLTIIAGENLSAAKAIAGTVCTNILEVPNEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFIKAYKQVDPPVHSSMRHLFGTWKGYFPPQTLQMIEKELGFTPAVNGSASSSATLRSESQSQRPAHSIHVNPKYLERQRLQQSSRIKGVANDTTRAILNSNEDSERSSRVLGASRPWLDPRINMHRIQRDAYNNSVPEKSLAESYGAIKNSSGISSIGTTGSRVTELGHDKTWYKAGISVAENTSNQSNGFSLKLGFSNREAPKSMNLGAHHQPTQNLTSIQSSVVPGSWKNSEEEEFMWDEMNSGMIGDGAASIANNMNTEPWMGGDDENLDGDQSQILHHDREISTARKQSFASGGHSSLPWQLQEQRSNEKLNLRPGHSEELLSALGCLPANTSSLVVRMPNQSSMPNATKDMSETMGQKQFDSMGTKPTSVQSPLQQQSASLPVTKLHPHPTQNLLEQDNGKASKTSQFLGDLQRQYIRDQPAALPPNAQVGRLHRSREKDLHGPLSSETSFLPRHQQQPLVSSQTEVIAKTKPLHSKVSLASESSEQSKSSLSAATVQTRFLNKSITNSFPGTSSSLVTKNLPSDLGVCPALSGRPSSATLISSVSAVASPSTLVPPDDDSSILDNISQANTGQKPKVSTKLPTSSNMSTVSAPTSTATKNNSLNPIANLLSSLVAKGLISTDSESSTKVPTEALVQLEARTESITASSSLPVPSVTGSTVLPVTSSKVVEDDAKASLIVSQSTNTKIRNIIGFDFKPDIVREMHPTVIKGLLDDSQHHCRFCGIKLKQEEQFNKHLEWHFAREREQHGLIRASRKWYENWFLSEPSDSVDDYCEETDRSPFDAMVPADESQCLCVLCGDLFEDVYCQERDEWMFEGAVYINNLDRNGEMESRNVGPIVHAKCLSENSVAGGIKMEQD 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g02174 1027 MobiDBLite consensus disorder prediction 61 75 - -
Arst6g02174 1027 Gene3D - 76 204 IPR008942 -
Arst6g02174 1027 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 45 1018 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Arst6g02174 1027 MobiDBLite consensus disorder prediction 214 238 - -
Arst6g02174 1027 MobiDBLite consensus disorder prediction 28 60 - -
Arst6g02174 1027 SUPERFAMILY ENTH/VHS domain 79 208 IPR008942 -
Arst6g02174 1027 MobiDBLite consensus disorder prediction 214 231 - -
Arst6g02174 1027 MobiDBLite consensus disorder prediction 509 546 - -
Arst6g02174 1027 SMART 558neu5 82 204 IPR006569 -
Arst6g02174 1027 MobiDBLite consensus disorder prediction 1 26 - -
Arst6g02174 1027 MobiDBLite consensus disorder prediction 719 767 - -
Arst6g02174 1027 ProSitePatterns Zinc finger C2H2 type domain signature. 889 909 IPR013087 -
Arst6g02174 1027 MobiDBLite consensus disorder prediction 1 80 - -
Arst6g02174 1027 MobiDBLite consensus disorder prediction 604 627 - -
Arst6g02174 1027 Pfam CID domain 88 198 IPR006569 -
Arst6g02174 1027 ProSiteProfiles CID domain profile. 79 207 IPR006569 -
Arst6g02174 1027 FunFam polyadenylation and cleavage factor homolog 4 76 204 - -
Arst6g02174 1027 CDD CID_Pcf11 84 196 IPR047415 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g02174 Arst-Chr6 55630076 55636714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g02174 77 407 C2H2 Transcription Factor Family AT4G04885 38.710 6.52e-54 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g02174 K14400 - gmx:100788958 1072.38