Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g02153 ATGGAGTTCTGGGGTGTTGAAGTAAAAAGCGGAGAAACTCTCGAGGTTGATCCGGGATATGGCAAGATGATCCATCTTTCAATGGCATGCCTGGGTGAGGTTAAGAAGGATAAAGGCGAACCAGTGACTGTGTATGTGAAATTTGGTGACCAGAGGCTTGTGATTGGAACACTTACTTCTGAGAACTTTCCTCAGATTTCTTATGATTTAATATTTGAGAAGGAATTTGAGCTATCACATAACTGGAAAAATGGGAGTGTCTTCTTTACTGGATATAAAGCTGAACCTCCTTTGGAATCTGAAAATGAAGAAGACTCTGAAGAGTTCGAAGATATTCCAGTTGCTGCTGCCAATGGAAATTCTGAGCTTGAGGTAAAGAATGCTGTCAAACTTGATGCCAATGAAGCTAAACAAAAGGAGAAAATAGGGGATCCAAGAAAGAAAGAGAAAGCAAATGAAAAGGATGCAAATGGTGAAGATGAGGAAGATTCATCTGATGCTGACTCTGATGAATCTGATGAGGATTCTAGTGAAGATGAGGCCATGGCAAATGGTGAGAAAGGTGGTGAAGGTGAAGATGACTCTGATGATGATGATGACAAGGACGAAGATGATGACGATGACGATGACGATGAATCTGACAAGGAGGAGACACTCAAGAAGGCTGAATTGAGCAAAAAGAGGGTTCATGAATCATCCAAGAAAACACCTGTTCCAGAGAAGAAGGCAAAATTTGTTACTCCTGAAAAGATTGACAACAAGGGTGGTGTTCATGTTGCAACTCCTTACCCAACTAAGCAGGCTATCAAGGCAGCTGCCAATAACAGGCAACCGGTGAAGCAGCAGACTCCAAAGTTAGTTGGAGACTATGGCTGCAAGGATTGCAACAGGTTGTTTAAGACAGAAGATGCCTTAAACTCCCATAACAAGGCCAAGCACAGTGCTAAGTGA 951 0.4227 MEFWGVEVKSGETLEVDPGYGKMIHLSMACLGEVKKDKGEPVTVYVKFGDQRLVIGTLTSENFPQISYDLIFEKEFELSHNWKNGSVFFTGYKAEPPLESENEEDSEEFEDIPVAAANGNSELEVKNAVKLDANEAKQKEKIGDPRKKEKANEKDANGEDEEDSSDADSDESDEDSSEDEAMANGEKGGEGEDDSDDDDDKDEDDDDDDDDESDKEETLKKAELSKKRVHESSKKTPVPEKKAKFVTPEKIDNKGGVHVATPYPTKQAIKAAANNRQPVKQQTPKLVGDYGCKDCNRLFKTEDALNSHNKAKHSAK 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g02153 316 ProSitePatterns Zinc finger C2H2 type domain signature. 292 313 IPR013087 -
Arst6g02153 316 FunFam Histone deacetylase HDT1 1 97 - -
Arst6g02153 316 Pfam Nucleoplasmin-like domain 3 92 IPR041232 -
Arst6g02153 316 Gene3D Nucleoplasmin core domain 1 96 - -
Arst6g02153 316 MobiDBLite consensus disorder prediction 158 180 - -
Arst6g02153 316 MobiDBLite consensus disorder prediction 190 214 - -
Arst6g02153 316 MobiDBLite consensus disorder prediction 117 260 - -
Arst6g02153 316 ProSiteProfiles Zinc finger C2H2 type domain profile. 290 316 IPR013087 -
Arst6g02153 316 MobiDBLite consensus disorder prediction 128 157 - -
Arst6g02153 316 Pfam C2H2-type zinc finger 290 314 - -
Arst6g02153 316 MobiDBLite consensus disorder prediction 215 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g02153 Arst-Chr6 53114165 53118165 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g02153 1 94 C2H2 Transcription Factor Family AT5G03740 54.255 3.94e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst6g02153 NPL 7.5e-12 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g02153 - - ccaj:109796568 361.688