Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst6g02069 | ATGGAGCAGCAGGAGGAAGAGGAACATGTGGTGCGCAGCAACAATAATAACAACAATGATCACATGCAAATTATGATGAAGGGCAAGCGCACCAAGCGTCAGAGGCTACCTTCCCCACTTAGGTTAGCTATGGCCATGCCTTCTTCAACTTCTTCAACCTCCTCTTTCGGTTTGGATACCCCAACAACAACCGCAAGAACGGAAGATGAGGATAATAACGACGAAGACATGGCGAATTGCTTGATCCTCCTGGCTCAAGGCGGCGGAGGCCGGGTAACCCGCCATAATAACAAAAAAGAAAGCATATTCAACCTTTACGATTGCAAGACTTGTAACCGAAGCTTCCCTTCCTTCCAAGCTTTGGGAGGACACAGAGCCAGCCACAAGAAGCCCAAGATCTTAACAAACAGTAGTAGTGTTATTACTACAGAAGAGAATTACAATAATGACCCTACAAGCACCGCCCTCACCTTGCAAATATCAAACAGCTCCATGTACTGCCGCAGCACCACCACCACCAAAACAACAACCGCCATGGAAACCCCTGCTCCTATTTCCAAGACAAGTAAGGTTCATGAATGTTCCATTTGCGGTGCCGAATTCACTTCTGGCCAAGCTTTGGGTGGTCATATGAGGAGGCACAGGGGTTTCTTGACCGTTTCTTCCGCCACAGCCGCAACCACAACCACCACCACTACAGCTACATCATCATCTATTAGTGGTGCTAATGCTGATCATCAAGAGACCAAGAACAATAATAATAATGTCAACAAGAATATTTTGAAGCTGGACCTCAATCTTCCGGCACCGGAAGATGATCATCACAACAGGGTATCAAAGTTCTCGTTCCAGTCCAAAGAGAAAGTTATTGTGTTCTCTTCTGCAGCTTCTCTCGTAGATTGCCATTATTAG | 912 | 0.4627 | MEQQEEEEHVVRSNNNNNNDHMQIMMKGKRTKRQRLPSPLRLAMAMPSSTSSTSSFGLDTPTTTARTEDEDNNDEDMANCLILLAQGGGGRVTRHNNKKESIFNLYDCKTCNRSFPSFQALGGHRASHKKPKILTNSSSVITTEENYNNDPTSTALTLQISNSSMYCRSTTTTKTTTAMETPAPISKTSKVHECSICGAEFTSGQALGGHMRRHRGFLTVSSATAATTTTTTTATSSSISGANADHQETKNNNNNVNKNILKLDLNLPAPEDDHHNRVSKFSFQSKEKVIVFSSAASLVDCHY | 303 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst6g02069 | 303 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 194 | 214 | IPR013087 | - | |
| Arst6g02069 | 303 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 33 | 287 | - | - | |
| Arst6g02069 | 303 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Arst6g02069 | 303 | MobiDBLite | consensus disorder prediction | 45 | 63 | - | - | |
| Arst6g02069 | 303 | SUPERFAMILY | beta-beta-alpha zinc fingers | 105 | 214 | IPR036236 | - | |
| Arst6g02069 | 303 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 192 | 216 | IPR013087 | - | |
| Arst6g02069 | 303 | Coils | Coil | 239 | 259 | - | - | |
| Arst6g02069 | 303 | Gene3D | Classic Zinc Finger | 104 | 214 | - | - | |
| Arst6g02069 | 303 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 106 | 133 | IPR013087 | - | |
| Arst6g02069 | 303 | SMART | c2h2final6 | 192 | 214 | IPR013087 | - | |
| Arst6g02069 | 303 | SMART | c2h2final6 | 106 | 128 | IPR013087 | - | |
| Arst6g02069 | 303 | Pfam | C2H2-type zinc finger | 191 | 215 | - | - | |
| Arst6g02069 | 303 | Pfam | C2H2-type zinc finger | 106 | 131 | - | - | |
| Arst6g02069 | 303 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 108 | 128 | IPR013087 | - | |
| Arst6g02069 | 303 | MobiDBLite | consensus disorder prediction | 235 | 254 | - | - | |
| Arst6g02069 | 303 | MobiDBLite | consensus disorder prediction | 45 | 72 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst6g02069 | Arst-Chr6 | 42782981 | 42784380 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst6g02069 | 18 | 303 | C2H2 Transcription Factor Family | AT5G03510 | 38.291 | 2.83e-59 | 189 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Arst6g02069 | zf-C2H2_6 | 2e-12 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst6g02069 | - | - | adu:107494043 | 519.62 |