Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g02052 ATGCCCCATAGAAGCTGCATTTTGCTACTGTGTATTGTTGGTTCCATGTTAGCACTTGAAGGAGCTGCAATGCTGAACCTAACTCTACCAGGACAACACCCTGACCCTGAAGCTGTTGCTAATGAAGTCCACAGGAAGGTGAATGGTTCAATGGCAAGAAGGGAAATGCTGTCGACAGTGTCTTCTTGCCTAACTGGTAACCCCATAGACGATTGCTGGAAATGTGACCCAGATTGGCCCAACAACCGGCAGAGGCTGGCAGACTGCGCCATTGGGTTTGGGCAACACGCTAAGGGCGGAAAGGATGGGGAGTTCTACATTGTCACAGATTCCTCAGATGATGATGCAGTAAACCCTAAGCCAGGAACACTCAGATATGCTGTCATACAGAATGAGCCGCTGTGGATCGTGTTCCCAAGTAACATGAAGATTAAGCTCTCTCAAGAACTCATCTTCAACAGTTACAAGACCCTTGATGGCCGTGGTGCTGATGTCCACATTGTTGGTGGTGGATGCATTACTCTCCAGTATATAAGTAATGTTATCATACACAACATTCATATCCACCATTGTCATCCTTCAGGGAACACAAATGTGCGTTCCAGCCCTGACCACTATGGCTACCGGACGCTGTCTGACGGGGATGGAATCTCCATCTTTGGGTCCAAAGACATATGGATAGACCACTGCACGCTGTCACGGTGCAAGGACGGGCTCATCGACGCAGTCATGGGCTCCACTGGAATCACAATCTCCAATAACTACTTCTCCCACCACAATGAAGTCATGCTCTTAGGCCACAGTGATGACTACCTGCCAGACTCAGGCATGCAGGTGACCATTGCCTTCAACCATTTCGGTCCCATGCTCGTCCAGCGCATGCCACGTTGCCGCCGGGGCTACATCCATGTGGTCAACAACGATTTCACGCGGTGGCAGATGTATGCCATTGGAGGCAGTGGGGAGCCCACCATTAACAGCCAGGGGAACCGCTACACGGCACCCCTGAACCCCTTTGCAAAGGAGGTGACCAAGAGGGTTGACACTGCGGAGGGGAAGTGGAAGGGCTGGAATTGGAGGTCGGAGGGGGATATCATGGTGAATGGCGCGTTTTTTGTGGCCTCTGGGGAAGGAGTTGAGGTTAAGTATGAGAAGGCTTATAGTGTTGAGCCAAAGTCTGCTGATAGGATTTCTCAGCTTACCATGTCCGCCGGCGTTCTCGGCGTTGCCAAGGACAACAGTGTGGGAATGTGGAGCAAAGGACCTAACAGCCAGGGCCAGGGCGACGGAGTCACATGGTTGGTGCCGGAATACACAGAGGACTATTCGCAGGGCTCAAGGGTGGTGCTGCCATCTTCCTCTACTTTCACCCTTGTGTGGTCTTTCCTGCTCTTGTTCATACTGTCTTGTAACAAGATACCGTCAACAGTTATTCTATAA 1440 0.5111 MPHRSCILLLCIVGSMLALEGAAMLNLTLPGQHPDPEAVANEVHRKVNGSMARREMLSTVSSCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQHAKGGKDGEFYIVTDSSDDDAVNPKPGTLRYAVIQNEPLWIVFPSNMKIKLSQELIFNSYKTLDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPDHYGYRTLSDGDGISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGPMLVQRMPRCRRGYIHVVNNDFTRWQMYAIGGSGEPTINSQGNRYTAPLNPFAKEVTKRVDTAEGKWKGWNWRSEGDIMVNGAFFVASGEGVEVKYEKAYSVEPKSADRISQLTMSAGVLGVAKDNSVGMWSKGPNSQGQGDGVTWLVPEYTEDYSQGSRVVLPSSSTFTLVWSFLLLFILSCNKIPSTVIL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g02052 479 Pfam Pectate lyase 150 326 IPR002022 -
Arst6g02052 479 PANTHER PECTATE LYASE 18-RELATED 31 411 IPR045032 GO:0030570
Arst6g02052 479 Gene3D - 66 408 IPR012334 -
Arst6g02052 479 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Arst6g02052 479 PRINTS Pollen allergen Amb family signature 357 381 IPR018082 -
Arst6g02052 479 PRINTS Pollen allergen Amb family signature 386 409 IPR018082 -
Arst6g02052 479 PRINTS Pollen allergen Amb family signature 113 138 IPR018082 -
Arst6g02052 479 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Arst6g02052 479 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Arst6g02052 479 PRINTS Pollen allergen Amb family signature 149 165 IPR018082 -
Arst6g02052 479 PRINTS Pollen allergen Amb family signature 213 234 IPR018082 -
Arst6g02052 479 FunFam Pectate lyase 66 408 - -
Arst6g02052 479 SUPERFAMILY Pectin lyase-like 59 396 IPR011050 -
Arst6g02052 479 SMART amb_all 141 338 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g02052 Arst-Chr6 40370292 40372521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g02052 1 419 Polysaccharide Lyase AT3G53190 77.570 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g02052 K01728 - gmx:100775595 777.319