Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g02018 ATGGACAATCCCTTCGACCACCATGTTCCTCCGCCACACGCCACCGTCACCGCAGCTGACTACGGAGTCTCCGATGACGACGAGGACGAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGATGACAACGAAGAGGACGAAGATTCATCGCCTAGGGCTTTCCCAGTGGCTCCTTCCACAACTTCTAATCCACAGCCAATTGTTATCACCGTGGAATCGCAGTCGCATAGCAGCTTCGGAGACGACGAAGTAAGCAACAAGCGCCGCAAAACGGAAGGCCGAGAGGCGTCGTCTTCGTCTTTGGCAATTGATGGCAGTCAAGGCAGCGAGTGGAACCGCACTGACATTGACGGCCTCTTCTGCCCTATCTGTATGGAAGCTTGGACCAACAGCGGCGACCACCAAATCTGTTGTCTTCCTTGTGGACACATATATGGTATGTCTTGTATAAAAAGATGGCTTCAACAGCGACGAAGTACAGGCAAGTGTCCACAATGCAATATAAAATGCTCATTAAAGGATGTGAGGAAGCTCTATGCATCTCGAGTAGTTACTGTTGATGATGAATCTCAGAAGAAAATTCGGTTGCTTGAAGCCAAATGTGCTGCACTGGAAAGTAAGGGTGCTGATTGGCGTGTGAAAGAGGCTATATGGCGGAAAAGAGAAGCTGCATACCGTCTGGAAATCCAGAAGCTTAAAGCGATACTACTGGATATGGAGAGAATGCATTTTGAACTCATAGATGGCACTCAGGATTATCAGTGGAGATCTGAAAAGGAGCAAAATTTTAGCTTAAAGTCCCATGTAAAAGCATCTTTTTGCAATTTTGCATTACAGAAAACATTTAATATGGATGATGCACGAGTATTTGATATGGATGTATCCAATCAAATTTTACTAATTGCACGAAAGCCAAGGGTGATAGGTGGAGCAGACTTTCTAACTAAAATGAGCTTGATACCTCCATTCGATATGGAAGATATCTTATTGCCTTCTACTACAGAGGGTATTAGAGACCTACATATTTCTCCTTCTGATAGAAGCCTAGCCCTCTATGCTTCAACAGGGAAGAAGTTATCAGTGCTCAGTGTGCAGAGCAAGAATACTGTTGTCAACTATGATCTACAGGTTCCTCCTTGGTCATGTTCTTGGGATCTCAACAATTCACATTACATGTATACTGGACTTCAGAATGGTTCTGTCTTGGTGTTTGATATACGACAAACTGCAGGACCCATGAAGTCTTTAGTTGGATTGACTAGCAACCCTGTTCATACTGTTCATTCTCTTCTGCAAACTTCATGTCTTCCTAACTCCATCTTATCTGCATCTGCCATTGGCCTTTGTCAGTGGAACATTGATTCTGAAGAAGGGCCATTCATGCTTCCTGAATCTGATAACCAAGGAGTTTGTATATCCCTTGCCTATTGCCCTAGCAGTGATGACGTTGTTGTAGAACAGCGCACTGATTATTTCAAAAAGATGGGTTCCTCGAATGCCAATCCAAGTAAAATTCGATTTCCAAAACATACTATTATAGACATAGAGGGTCAAAGAAGTTTGTTTGCAGCTGTAGATGAAGCAACATTTGAATTGATCTTGCACGAGCTGCCTTCTTTTAGCGTCAACCAACGATTCAAACTGCCTGCTCAGGCTCGTGATATTAGGTACTCTCGGAGCTGTGGAATTCTTGGCTGTTTGAGTGAGACGACATTGCAACTTTTCTACACCAAAGTCTTGTGA 1770 0.4384 MDNPFDHHVPPPHATVTAADYGVSDDDEDEEEEEEEEEEEEEEEEEEEEDDNEEDEDSSPRAFPVAPSTTSNPQPIVITVESQSHSSFGDDEVSNKRRKTEGREASSSSLAIDGSQGSEWNRTDIDGLFCPICMEAWTNSGDHQICCLPCGHIYGMSCIKRWLQQRRSTGKCPQCNIKCSLKDVRKLYASRVVTVDDESQKKIRLLEAKCAALESKGADWRVKEAIWRKREAAYRLEIQKLKAILLDMERMHFELIDGTQDYQWRSEKEQNFSLKSHVKASFCNFALQKTFNMDDARVFDMDVSNQILLIARKPRVIGGADFLTKMSLIPPFDMEDILLPSTTEGIRDLHISPSDRSLALYASTGKKLSVLSVQSKNTVVNYDLQVPPWSCSWDLNNSHYMYTGLQNGSVLVFDIRQTAGPMKSLVGLTSNPVHTVHSLLQTSCLPNSILSASAIGLCQWNIDSEEGPFMLPESDNQGVCISLAYCPSSDDVVVEXQRTDYFKKMGSSNANPSKIRFPKHTIIDIEGQRSLFAAVDEATFELILHELPSFSVNQRFKLPAQARDIRYSRSCGILGCLSETTLQLFYTKVL 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g02018 590 Pfam Ring finger domain 130 176 IPR001841 -
Arst6g02018 590 SUPERFAMILY RING/U-box 121 182 - -
Arst6g02018 590 SUPERFAMILY WD40 repeat-like 285 492 IPR036322 GO:0005515
Arst6g02018 590 Gene3D - 257 501 IPR015943 GO:0005515
Arst6g02018 590 ProSiteProfiles Zinc finger RING-type profile. 130 176 IPR001841 -
Arst6g02018 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 236 IPR013083 -
Arst6g02018 590 MobiDBLite consensus disorder prediction 90 104 - -
Arst6g02018 590 MobiDBLite consensus disorder prediction 1 115 - -
Arst6g02018 590 MobiDBLite consensus disorder prediction 63 89 - -
Arst6g02018 590 Coils Coil 23 58 - -
Arst6g02018 590 Coils Coil 196 216 - -
Arst6g02018 590 SMART ring_2 130 175 IPR001841 -
Arst6g02018 590 PANTHER RFWD3 PROTEIN 25 586 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Arst6g02018 590 MobiDBLite consensus disorder prediction 22 57 - -
Arst6g02018 590 CDD mRING-C3HGC3_RFWD3 126 188 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g02018 49 188 C3H Transcription Factor Family AT5G48655 29.412 1.57e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g02018 K15691 - gmx:100818898 619.387