Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01951 ATGAGTCATGGTGCCCCTCAGTACCACAAGGACAAGGTGGTTCGTGATCTGTCTTCTGAAACTAATAATACTTTGGAGAACGGACCTGTTATGCACAACATGATTGCTACAAAAGCTGACGTAGGGCATTCCACTTCAAGGTGTGGCGGCTCTGAACAATGTAAAGATAATACACAAACTGGTGTTCATGTAAAAGATAAAAAAGCTGTTGGAGAACTTGTATGTTTGCAGTGCTTGCATGGTAGTGAACTCATTTGCTGCTTTGGAAAAGGATGTCAAAGGAGGTACCATCCCTCTTGTTTGAATCCTCCTCTCAATTACTACCCTGTGGGCTTTTGGAATTGTGCATGGTGTGTTAAGAAAAAGCTAGATCTTGGTGCGTACTCCATTTCTGAAGGGGTGGAGTCCATCTTGGATTCTAGAGAAGGCATTTCGAAAAACAATGTGACGGAAAAGGAGTACTTTGTCAAGTATCTGGGCCTTGCTCATGCTCACAACCGCTGGATTCCAGAAACACAAATGCTTGAAGAGGGGCCAAAAGTTTTGTCAGCATTTAAGAGGAAGCGCCGGGTTATCAAGTGGAAAAAAGAATGGAGTATACCCCACCGCTTGTTGCTAAAAAGAGCAATTGTGTTACCAAAGCAAAATAAAGAACATTTAGATGGGCATGATAACAATTATTCAGTTGGCTGTTTTGAATGGCTTGTAAAGTGGTCTGGTCTTGGATATGATCATGTTACATGGGAACTAGATAGTGCTTCCTTTTTGACGTCGTCTGAAGGCATGAAACTCAAAAATGATTATGAAAGTCGTCGTCTTCAAAAGGGGATGGATGGAGACATTAATGAGGAGAGAAAAGCTTCCTTTGCTGAATTACCTGTACCGCCTTCAGGTAATTCAGTGGCAGTTTCTAGTCAGCATTTGAGTTATGTGAACAAGCTTTGCATGTGTTGGCACAAAGGTCAGAGTGCTGTCATTGTAGATGATAAGATTGACCAGGAGCGGGTTATGAAGGTGATGTCATTTATATTGTCATTGCATTGTAAGGTGACAAGGCCTTTCCTCATTGTCTCAACTTCTGCTGCTCTTGCTGTGTGGGAAAGAGAGTTCTTACATTTGGCTCCATCTGCAAATCTTGTCATTTACAAGGGAAACAAAGATGTACGGAGAAGCATAAGGACCTTGGAGTTTTATAACGATGACAATGGCATCTTATTTCAAATATTATTATCATCGTCTGATATTATCGTTGAGGACTTAAAGGAACTACAATGCATTTTGTGGGAAGCAATAATAGTTGATGAATGCCAGCGACCTAGAATTTTGGAACACCTTGACAATATCAAGATTTTGACAACAAAGTTGAGGCTCCTGGTTGTTAGCGGACAGATCAAGGATGATCGAGCTGATTATGTCAAAATGCTTTCCTTCCTCAACTCTGAAAATCATGTGTTAAATACTACTGAAACAGAGCCATTAGTCTCTGATAGCATTTCCGATTTGAAAAGCAAATTGGATCAATATGTGGCATTTAGAACAAAAACAGGGTCCACTAGGTTTGCAGAGTTTTGGGTTCCTTCCAAGCTTTCCAGTTTGCAACTTGAGCAGTATTGTTCATTGCTGCTTTCTGACAGAACTCTGCTATGCTCAGCCCAAAAGTCTGACAAGGTCAATGCTCTCCGCGGCCTCCTTAACTCAACAAGGAAGTGCTTGTTCAACCATCCCTTTCTCTTGGACTCGTCACTATATAATTCCGTCAATAAAGGTCTGTCTGTTGAAGAGCAGTTGAATATTGGGATAAAAGCAAGTGGCAAATTGCAGCTTCTTGAAAAAATCCTTTTGAAAGCAAGAAGCCGTGGTTTAAGAGTGATGATATTATTTCAGTCAACTAGTGATTTGACATCGATTGGAGATATTTTGGATGATGTACTTTGTCGGAGATTTGGCGAACATTGTTATGTACGATATGCTGCTGGGTATGCGCCCAAAGCGAAGCAAAGTGCTCTAGACAAATTTAATGATGGCGAAAGAGCATTTGTCTTCTTGTTGGAAAGTCGTGCTTGCCTCCCTAGTGTTAAGCTTTCCTCTGTTGATGCCATTATATTGTTTGACAGTGACTGGGACCCAGAAAATGATTTAAGAGTCTTACAACGTATGCCTATAAGCTCACAGTTCGAACAGTTAACGGTGTTTAGACTATACTCATCTTTTACTGTTGAAGAAAAGGTTCTAATGCTTGCAAAAGAGGGTAGTAGTATCCAGTTGGTTAACAATAGTACCTCTCATGCCCTGCTCAGATGGGGTGCCACCTATCTTTTCAGTAAGCTTGATGACTTACATGGCAGCAACACTCCAGTCTTTGCTCAAGACATTGCCTCTGATCAGTCACTTCTACATGATGTAATCTGTGAGTTATCAACCGTATTTTCTGGTGGAAGCAGTGACATTGATAATCATGGATTGTCCTTCATAGCGAGAGTATGGCAGAAAGGAGGGGAATATGCAAAGAACATTTTATTGCATGGCGAAAGAGTGATGAAGGAATTGGATGATGGTTTTGATTTTTTTTCTTGGAGTAATCTCCTTCAGGGAAGGAGTCCTAGATGGAAATTGTTGTCTGTTTCATCTCAAAGGATCAGAAAACCTGCCAATCACTTTGATCACAAAGCAAAGGAATCTGAAAGTGAAAATAATGCTGATAATAGAAAGAAGAGGAAAGTGTCTGAGGGTAACGTTGATTCCAAAAGGAAGGAAGTGTCCAAGGATACTACAGTCACAAGGAAGGGGAAAGTGCCAGATCATGCCAATTCCAAATATTTGAAAAAAAGTTTGAAGAACAAGAAGCTAAACACTAGTAATGTAGATGAGTTCTTGCCAAAGCCAGATTTAGCAGGTCTTTGTGATGTTCTACAACTTCCGAAAAATGTCAAGGCTCTTGGTGCAAGGCTTCTTGAGCACATATTGGAATATTTCAACGTTAATTGGCGAGACGTTTCTACCATGCAGGCATTTGAATTATCTGTGTGTTGGCTTGCGGCTTCGTTATTGAAGCACAATTTTGATAAGCAAGGTTCACTTGCACTTGCGAAAGTGCACTTGAACTTCAATTGCGAGGAAGAGGAAGTAACCTATGTTTACTCTAAACTGCTGAAATTTAAGAAGGAATTTTCAAGTTGTTTACAAAGTGGAATTTGTGTTGAGAAATGTACATCAGACTGCGAAACACCTGGGTTGACAGATTTGGTGGAGGATATGCAAAATGGTTTTCAGGGTCCTCTAGAATCCGACACATATAGACATGATCTTCAAAGGGAATCTCCCACAACTGTGCTAGCTACTCATTATCAGACTTGTGCAGAAAATTTTCAAATCAGACTTACAGATATTGGAAGTTGTCCTCAAAAGTCATCTGGCACTTTCCCTGCCAAAGCAGATGCTATCCCCGTGACATCCAAAGCTTCTTTCTTGGAGCATCAGAGTGAGGTCTTCGATTCAAGTGATGATCCTTGTAATGTCAACCCTGCCACTGGTTCTTTGGAAAATCAAATTAATGGCGATGATTTTGAAGTTTCTCTAATAAATAATAATGAAGTGGTTGAGACAATCACTTGCAGTACTGCTGATGTTCCTGAGGTCAACCAGCATTGCAGTGTAGTGAGTGCTGTCCATGGTGAGTCTATTATGGATTTTCCTGAGACTACTTTCCCATATATGGAACCATCAAATACAGATCTACTGCCACTGCCTCAGGAGGATGTTACATCTTTTTTGGAGAATATTTCAATTGGTGAAGTCTTGCCTTTTGATGAAATATTTTTTGAAAATTATAACCTTCATGAGGATGAACCAACATTACAAGTACCAGATGACCCACCTGAATCAGTCCCAGACCCATTGCAAATTGAAATGGAGAGAATAAAAAAGGCGACTGAAGAAGCTAACAGGATACGCCAGCAAAAATTACACCAGCTTGAGTCAGACCATGGTATGGAGGTTAAAGAATTGGTTGCAAAGTATCAAATGTTGCTTCAGAATATCAGTACTGAAGTAGCATTGCAAAAAAAGGAACTTGACGCATATTATAAAACAGTTCAAAAGAATAAGTTGTTGGCTTCTGTTTTGGATCACAATCACAAGGAATATAAAAGAGAAGCAGTTCTATTCGCAGAACAAGGCTTACCCTCTGCAATGGGAACACCTAGCTCCTCAAGTACTCAACAAAGAGAGCACCAACCCCCTCTTATGTCTGATCAAAGACTCGAACAGTGTCTACCGATGATTCCCCCACACTTGTTTACTCCAACGGAAGCGGTTAATACTCTGGAGATTGCTAACACTTCAACAGCCGTTCCAGAAATGAGCGCACCTAGAGAATGTATTGATCCCATGATTCAGTCCTATGTAAACTTGAATTACGGCTGTTATTCAATGGCCTCAAACCCCCATCTTGAAGCCTCTAATTCAGTGCCTATGATGCCAAGTCTAAGTAGTGGAATACCAGAACAGCAATTGCCACTACATTTACATCAATGGCAATATCAGTAA 4545 0.4053 MSHGAPQYHKDKVVRDLSSETNNTLENGPVMHNMIATKADVGHSTSRCGGSEQCKDNTQTGVHVKDKKAVGELVCLQCLHGSELICCFGKGCQRRYHPSCLNPPLNYYPVGFWNCAWCVKKKLDLGAYSISEGVESILDSREGISKNNVTEKEYFVKYLGLAHAHNRWIPETQMLEEGPKVLSAFKRKRRVIKWKKEWSIPHRLLLKRAIVLPKQNKEHLDGHDNNYSVGCFEWLVKWSGLGYDHVTWELDSASFLTSSEGMKLKNDYESRRLQKGMDGDINEERKASFAELPVPPSGNSVAVSSQHLSYVNKLCMCWHKGQSAVIVDDKIDQERVMKVMSFILSLHCKVTRPFLIVSTSAALAVWEREFLHLAPSANLVIYKGNKDVRRSIRTLEFYNDDNGILFQILLSSSDIIVEDLKELQCILWEAIIVDECQRPRILEHLDNIKILTTKLRLLVVSGQIKDDRADYVKMLSFLNSENHVLNTTETEPLVSDSISDLKSKLDQYVAFRTKTGSTRFAEFWVPSKLSSLQLEQYCSLLLSDRTLLCSAQKSDKVNALRGLLNSTRKCLFNHPFLLDSSLYNSVNKGLSVEEQLNIGIKASGKLQLLEKILLKARSRGLRVMILFQSTSDLTSIGDILDDVLCRRFGEHCYVRYAAGYAPKAKQSALDKFNDGERAFVFLLESRACLPSVKLSSVDAIILFDSDWDPENDLRVLQRMPISSQFEQLTVFRLYSSFTVEEKVLMLAKEGSSIQLVNNSTSHALLRWGATYLFSKLDDLHGSNTPVFAQDIASDQSLLHDVICELSTVFSGGSSDIDNHGLSFIARVWQKGGEYAKNILLHGERVMKELDDGFDFFSWSNLLQGRSPRWKLLSVSSQRIRKPANHFDHKAKESESENNADNRKKRKVSEGNVDSKRKEVSKDTTVTRKGKVPDHANSKYLKKSLKNKKLNTSNVDEFLPKPDLAGLCDVLQLPKNVKALGARLLEHILEYFNVNWRDVSTMQAFELSVCWLAASLLKHNFDKQGSLALAKVHLNFNCEEEEVTYVYSKLLKFKKEFSSCLQSGICVEKCTSDCETPGLTDLVEDMQNGFQGPLESDTYRHDLQRESPTTVLATHYQTCAENFQIRLTDIGSCPQKSSGTFPAKADAIPVTSKASFLEHQSEVFDSSDDPCNVNPATGSLENQINGDDFEVSLINNNEVVETITCSTADVPEVNQHCSVVSAVHGESIMDFPETTFPYMEPSNTDLLPLPQEDVTSFLENISIGEVLPFDEIFFENYNLHEDEPTLQVPDDPPESVPDPLQIEMERIKKATEEANRIRQQKLHQLESDHGMEVKELVAKYQMLLQNISTEVALQKKELDAYYKTVQKNKLLASVLDHNHKEYKREAVLFAEQGLPSAMGTPSSSSTQQREHQPPLMSDQRLEQCLPMIPPHLFTPTEAVNTLEIANTSTAVPEMSAPRECIDPMIQSYVNLNYGCYSMASNPHLEASNSVPMMPSLSSGIPEQQLPLHLHQWQYQ 1514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01951 1514 Pfam SNF2-related domain 337 481 IPR000330 GO:0005524|GO:0140658
Arst6g01951 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 480 IPR027417 -
Arst6g01951 1514 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 83 1440 - -
Arst6g01951 1514 ProSiteProfiles Zinc finger PHD-type profile. 72 121 IPR019787 -
Arst6g01951 1514 Gene3D - 210 262 - -
Arst6g01951 1514 SMART PHD_3 74 119 IPR001965 -
Arst6g01951 1514 ProSitePatterns Zinc finger PHD-type signature. 75 118 IPR019786 -
Arst6g01951 1514 Gene3D - 133 193 - -
Arst6g01951 1514 SUPERFAMILY Chromo domain-like 230 254 IPR016197 -
Arst6g01951 1514 Pfam Chromo (CHRromatin Organisation MOdifier) domain 134 188 IPR023780 -
Arst6g01951 1514 MobiDBLite consensus disorder prediction 1395 1413 - -
Arst6g01951 1514 Gene3D - 305 519 IPR038718 -
Arst6g01951 1514 SMART chromo_7 197 270 IPR000953 -
Arst6g01951 1514 SMART chromo_7 131 190 IPR000953 -
Arst6g01951 1514 MobiDBLite consensus disorder prediction 1394 1414 - -
Arst6g01951 1514 SUPERFAMILY Chromo domain-like 91 193 IPR016197 -
Arst6g01951 1514 CDD SF2_C_SNF 603 719 - -
Arst6g01951 1514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 132 IPR013083 -
Arst6g01951 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 751 IPR027417 -
Arst6g01951 1514 Gene3D - 1296 1376 - -
Arst6g01951 1514 ProSiteProfiles Chromo and chromo shadow domain profile. 204 249 IPR000953 -
Arst6g01951 1514 ProSiteProfiles Chromo and chromo shadow domain profile. 132 197 IPR000953 -
Arst6g01951 1514 Gene3D - 520 750 IPR027417 -
Arst6g01951 1514 MobiDBLite consensus disorder prediction 882 932 - -
Arst6g01951 1514 Coils Coil 1299 1319 - -
Arst6g01951 1514 CDD CD_CSD 134 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01951 Arst-Chr6 29709274 29729274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01951 601 743 RAD5 or RAD16-like Gene Family AT5G43530 27.972 4.63e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst6g01951 SNF2_N 1e-07 CL0023