Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01943 ATGGAACAAATCACCATTACCAACGGCAAGGGTAACGGCCACCTCCACCACCAGAACCACAATGACTCATTCTGCTTGAAAACCGCCACAACCACCAATAATAACGGCAGTGACCCGTTGAATTGGGGAGTGGCCGCAGAGGCACTGAAGGGGAGCCACCTGGATGAGGTGAAGCGCATGGTGGCGGAGTACCGGAAGCCGGTGGTGAAGCTGGGCGGAGAGACGCTGACGATATCTCAGGTGGCGGCGATCGCGGCGCACGACCAAGGTGTGACCGTTGAGCTGTCGGAATCGGCGAGGGCGGGCGTTAAGGCCAGCAGCGATTGGGTTATGGACAGCATGAACAACGGCACTGACAGTTACGGCGTCACTACCGGCTTCGGTGCCACGTCACACCGCCGAACCAAACAAGGTGGTGCTCTCCAGAAAGAGCTCATCAGGTTCTTGAATGCTGGAATATTTGGCAATGGCACAGAATCAAGCCACACATTGCCACACACGGCAACGAGAGCAGCAATGTTAGTGAGGATCAACACTCTTCTCCAAGGCTACTCTGGCATCAGGTTTGAAATTTTGGAAGCCATAACCAAGCTCTTGAACACCAACATCACACCATGCTTGCCACTCCGCGGCACAATCACAGCGTCCGGGGACCTCGTCCCACTCTCATACATAGCGGGACTGCTCACCGGAAGGCCCAACACGAAAGCAGTGGGGCCATCCGGGGAGCTGCTCAATGCCAAGGAGGCATTCGAGTTGGCCGGAATCAACGCCGACTTCTTTGAATTGCAGCCTAAAGAAGGCCTTGCACTTGTCAACGGCACCGCAGTGGGTTCCGGCCTGGCCTCTATAGTTTTGTTCGAGGCGAACGTGCTTGCGGTTTTGTCGGAAGTTCTTTCGGCTATTTTCGCCGAAGTGATGCAGGGTAAGCCAGAGTTCACTGATCACTTGACTCACAAGCTAAAACACCACCCTGGCCAAATTGAAGCAGCTGCTATAATGGAACACATTTTGGATGGAAGCTCATACATGAAAGCCGCTAAGAAGTTACATGAAACGGATCCATTGCAGAAGCCGAAGCAAGATCGTTACGCCCTTAGAACTTCGCCGCAATGGCTAGGTCCTCTTGTGGAAGTGATTAGGTTTTCAACCAAGTCGATCGAGAGAGAGATTAACTCTGTTAATGACAATCCTTTGATTGATGTGTCAAGGAACAAGGCCTTGCATGGTGGTAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGATAACACGCGTTTGGCTTTGGCTTCGATAGGAAAACTCATGTTCGCGCAATTTTCGGAACTTGTCAATGATTTCTATAACAACGGCTTGCCTTCGAATCTCTCTGCTGCTAGGAATCCAAGCTTGGATTACGGATTCAAAGGTGCCGAAATTGCAATGGCTTCTTACTGCTCTGAGCTTCAATACCTTGCGAATCCGGTAACCAGCCATGTGCAGAGTGCTGAGCAGCACAACCAGGATGTGAACTCGTTGGGTTTGATTTCTTCTAGAAAGACCAATGAAGCTATTGAGATTCTGAAACTCATGTCTTCCACTTTCTTGATGGCGCTTTGCCAAGCCATTGACTTGAGGCATCTAGAGGAGAATTTGAAGAACGCTGTCAAGAACACTGTCAGCTTAGTCGCCAAGAGATCGCTTACCACCGGTGTTAACGGGGAGCTTCATCCTTCAAGATTCTGCGAAAAGGATTTACTCAAAGTGGTTGATAGGGAGCATGTTTTCACCTACATTGACGATCCTTGCAGCGCTGTTTACCCGCTGATGCAGAAGCTGAGGCAAGTGCTTGTGGACCACGCTTTGGCCAATGCAGAGAGTGAGAAGAACGCAAACACCTCCATCTTCCAGAAGATTGCGATCTTCGAGGACGAGTTGAAGGCCGTGCTGCCAAAGGAGGTTGAGGGAGCTAGAATCGCTTATGAGAGTGGAAACTCAACGATCCCAAACAAGATCAAGGAATGCAGGTCCTACCCACTTTACAGGTTTGTCAGGGAGGAATTGGGAACCGGTATGCTCACCGGGGAAAAGGTTAGGTCACCGGGCGAAGAATTTGACAAGGTTTTCACAGCCATGTGCCAGGGGAAGATCATTGATCCTCTACTTGAATGCCTTGGAGAGTGGAACGGTGCTCCTCTTCCTATTTGTTAG 2190 0.5064 MEQITITNGKGNGHLHHQNHNDSFCLKTATTTNNNGSDPLNWGVAAEALKGSHLDEVKRMVAEYRKPVVKLGGETLTISQVAAIAAHDQGVTVELSESARAGVKASSDWVMDSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNTNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNTKAVGPSGELLNAKEAFELAGINADFFELQPKEGLALVNGTAVGSGLASIVLFEANVLAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHETDPLQKPKQDRYALRTSPQWLGPLVEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSAARNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLMALCQAIDLRHLEENLKNAVKNTVSLVAKRSLTTGVNGELHPSRFCEKDLLKVVDREHVFTYIDDPCSAVYPLMQKLRQVLVDHALANAESEKNANTSIFQKIAIFEDELKAVLPKEVEGARIAYESGNSTIPNKIKECRSYPLYRFVREELGTGMLTGEKVRSPGEEFDKVFTAMCQGKIIDPLLECLGEWNGAPLPIC 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01943 729 NCBIfam phenylalanine ammonia-lyase 38 718 IPR005922 GO:0005737|GO:0006559|GO:0016841
Arst6g01943 729 NCBIfam phenylalanine ammonia-lyase 38 718 IPR005922 GO:0005737|GO:0006559|GO:0016841
Arst6g01943 729 Gene3D - 29 275 IPR024083 -
Arst6g01943 729 Pfam Aromatic amino acid lyase 76 552 IPR001106 -
Arst6g01943 729 FunFam Phenylalanine ammonia-lyase 542 663 - -
Arst6g01943 729 FunFam Phenylalanine ammonia-lyase 29 275 - -
Arst6g01943 729 Gene3D - 542 663 IPR023144 -
Arst6g01943 729 PANTHER HISTIDINE AMMONIA-LYASE 33 729 IPR001106 -
Arst6g01943 729 PANTHER HISTIDINE AMMONIA-LYASE 33 729 IPR001106 -
Arst6g01943 729 SUPERFAMILY L-aspartase-like 38 729 IPR008948 GO:0003824
Arst6g01943 729 Gene3D Fumarase/aspartase (Central domain) 276 724 - -
Arst6g01943 729 FunFam Phenylalanine ammonia-lyase 276 582 - -
Arst6g01943 729 CDD PAL-HAL 74 539 IPR001106 -
Arst6g01943 729 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 211 227 IPR022313 GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01943 Arst-Chr6 29036641 29042246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01943 35 729 Monolignol Biosynthesis Gene Families AT2G37040 84.892 0.0 1253