Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01911 ATGTTGCCCGGTGACCCCTTTTCGCTATCCACTTCTCTCGCTGCTGCTGGGTTCACCCAAGACCAAAACTTAAACTCCATCGCAAACCCTAACCCTAAACCTAAACCTAATAGTAATCCCCCTCCAGCCACCAACAAGAAGAAGAGAAACCTTCCAGGAACACCAGATCCAGATGCAGAAGTCATTGCTCTTTCGCCGAAGACGCTCATGGCGACGAACAGATTCATCTGCGAGATATGCAACAAAGGATTCCAGAGGGATCAGAATCTTCAGCTGCACAGGAGGGGACACAACCTGCCATGGAAGCTGAGACAGAGGACGAACAAGGAGGTGAAGAAGAAGGTGTACATCTGCCCGGAGAAGAGCTGCGTCCACCACGAGCCGGCAAGGGCGCTGGGCGACCTGACAGGGATCAAGAAGCACTTCAGCAGAAAGCATGGCGAGAAAAAGTGGAAGTGCGAAAAATGTTCCAAGAAGTACGCTGTCCAATCTGATTGGAAAGCTCACTCCAAAACCTGCGGCACCAGAGAATATAAATGTGACTGTGGCACCCTCTTTTCCAGGAAGGATAGCTTTATTACTCACAGAGCATTTTGCGATGCATTGGCTGAGGAGAGTGCGAGGCTGAACTCGGTTTCTACGTCGACGAATCTGAGTTTCAAGAGCGAAGAGGCAACAACGCAGCAGGGAGTTCTGAATAATAATGTTGGGGGCGGAGTTGGATTTCGATTTGATTTCAATAATGAAATGGGAATGGTTGGTGCAGAACAAGAACAAATTATGAGGCCAAACTTGTCACTGTGGTTGAACCAACAACATGGAAACAACCGTCATCAGATTAATCAATTTGATATGCCATCATCATCAAGCTCTCATCATCAAGTTATGCACATGCCTATGCCTATGTTGCCTAATGATTTTGGAATGCTTGCTCCCAATTCATCAAAGGTATCGGAAGAAGGTGGGGGCTCAGATCATAATTCAGGTTTGGCATCTATGTATTCTGAGAATCAAAGCAAGCAATCATCAAAGGCACCTTCACCTTCAACTTATTCTCCGATGTCAGCCACTGCGCTTCTTCAGAAGGCAGCGCAAATTGGGTCCACCAACAACCCTTCAACTTTCAGTGCAAGTTTTGGGCTCATGACCTCTTCATCTTCCATTCAAACCACTACTGCTAGTAATTCAAACCAAAACCAACAGGGAAGAAGAATTGATCAGAGTATTAGGCAGCCAGATCAGTGTTTTAGCGCATTAATGCATTCGTCACAAAGTTTTGATGATCAGTTTTTGAGTAATCATCATCCTGGTTCATCAAGTGCTGCGGGGCATAACAATAATTTTACAAGAGACTTTCTTGGCATGAGTAGAGGACCATTCCTACCCCAAGAGCTAGCAAAGTTTGCTTCCGTAGGCTCATCAATGGGTTTGACCCAATTCACTACTAGCGCAACCCATCAATGA 1464 0.4604 MLPGDPFSLSTSLAAAGFTQDQNLNSIANPNPKPKPNSNPPPATNKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVKKKVYICPEKSCVHHEPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLNSVSTSTNLSFKSEEATTQQGVLNNNVGGGVGFRFDFNNEMGMVGAEQEQIMRPNLSLWLNQQHGNNRHQINQFDMPSSSSSHHQVMHMPMPMLPNDFGMLAPNSSKVSEEGGGSDHNSGLASMYSENQSKQSSKAPSPSTYSPMSATALLQKAAQIGSTNNPSTFSASFGLMTSSSSIQTTTASNSNQNQQGRRIDQSIRQPDQCFSALMHSSQSFDDQFLSNHHPGSSSAAGHNNNFTRDFLGMSRGPFLPQELAKFASVGSSMGLTQFTTSATHQ 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01911 487 MobiDBLite consensus disorder prediction 303 354 - -
Arst6g01911 487 Gene3D Classic Zinc Finger 129 208 - -
Arst6g01911 487 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Arst6g01911 487 MobiDBLite consensus disorder prediction 12 32 - -
Arst6g01911 487 FunFam protein indeterminate-domain 12-like 54 122 - -
Arst6g01911 487 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Arst6g01911 487 MobiDBLite consensus disorder prediction 328 354 - -
Arst6g01911 487 Gene3D Classic Zinc Finger 53 128 - -
Arst6g01911 487 SMART c2h2final6 75 97 IPR013087 -
Arst6g01911 487 SMART c2h2final6 116 146 IPR013087 -
Arst6g01911 487 SMART c2h2final6 151 171 IPR013087 -
Arst6g01911 487 FunFam protein indeterminate-domain 5, chloroplastic-like 129 208 - -
Arst6g01911 487 SUPERFAMILY beta-beta-alpha zinc fingers 74 171 IPR036236 -
Arst6g01911 487 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 33 466 IPR031140 -
Arst6g01911 487 Pfam Zinc-finger double-stranded RNA-binding 75 97 IPR022755 -
Arst6g01911 487 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01911 Arst-Chr6 25747391 25749736 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01911 1 472 IDZ Gene Family AT5G03150 47.269 7.86e-128 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst6g01911 zf-C2H2_jaz 7.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g01911 K25870 - gmx:100812495 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst6g01911 6 25747391 25749736 Arst6g01911 6 25747391 25749736 ECH
Arst6g01911 6 25747391 25749736 Arst6g00922 6 8256730 8259131 PCT