Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst6g01892 ATGAGACCACAGCAGACAGAAGTTTGTGCTACAGATAAAGTCTGCAGTTGCAGGCATTGTGGAGGCAAGGCAGATGGGACAGACTCCTTGATTTGTGATTCATGTGAGGAGATGTACCATGTATCTTGTATTGTGCCGGCTTTGAAGGAATTACCTGAAAAAAGCTGGTTCTGTGCCAATTGTACTGCTATTGAAATAAGATCTCCACATGATAATTGTGTGGTGTGTGAAAGGTTGAATGCCCCAAAGTCCTTGAACAACATTGTTGGTGATGAGAGCATTCCTACAAATGATGAAACACACAATGAATTGGAGGAAAATTCAAATTGTACATATGGGATCGAGGTGTCCATAGGGAGAAGAAACTTGCCTGATTGCAAAATTTGTAGGGAGGAAGTAGATGGAGAAGATGTACGGATATGCGGTCACAATTCATGCCCTAGTAAATACTATCATGTAAGGTGTTTGTCCACTAAGCAGGTCCAGTCATATGCTCACTGTTGGTACTGCCCTTCTTGTTTATGTCGAGTTTGCCTCGTTGATCGAGATGATCACAAGATTGTTCTCTGTGATGGTTGCGACCATGGATACCACATCGATTGCATGGAGCCTAAACGGACTACCATTCCAAAAGGCAACTGGTTCTGCAGAAAATGCGATGCAGGGATCCAAGCAATACGCCGGGCTAAAAAGACATATGAGAATTTCAATTTTAGAACTGGCGAAGATGTTTCAAAGCCTAAGTATAAGCTTGGTAAGAAATGGAAACAAGGACGAGAATTGGAGAAAGATGGAGGAATGGACATGCTTTTAACAGCAGCCAACACACTTAAATTTGAAGAGAACTTGGCTAGTAGCTAG 861 0.4228 MRPQQTEVCATDKVCSCRHCGGKADGTDSLICDSCEEMYHVSCIVPALKELPEKSWFCANCTAIEIRSPHDNCVVCERLNAPKSLNNIVGDESIPTNDETHNELEENSNCTYGIEVSIGRRNLPDCKICREEVDGEDVRICGHNSCPSKYYHVRCLSTKQVQSYAHCWYCPSCLCRVCLVDRDDHKIVLCDGCDHGYHIDCMEPKRTTIPKGNWFCRKCDAGIQAIRRAKKTYENFNFRTGEDVSKPKYKLGKKWKQGRELEKDGGMDMLLTAANTLKFEENLASS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst6g01892 286 ProSiteProfiles Zinc finger PHD-type profile. 14 64 IPR019787 -
Arst6g01892 286 PANTHER OS02G0192300 PROTEIN 4 112 - -
Arst6g01892 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 221 IPR013083 -
Arst6g01892 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 177 IPR013083 -
Arst6g01892 286 ProSiteProfiles Zinc finger RING-type profile. 126 173 IPR001841 -
Arst6g01892 286 ProSitePatterns Zinc finger PHD-type signature. 15 61 IPR019786 -
Arst6g01892 286 SUPERFAMILY FYVE/PHD zinc finger 12 63 IPR011011 -
Arst6g01892 286 ProSitePatterns Zinc finger PHD-type signature. 167 219 IPR019786 -
Arst6g01892 286 ProSiteProfiles Zinc finger PHD-type profile. 172 222 IPR019787 -
Arst6g01892 286 Gene3D - 2 64 - -
Arst6g01892 286 Pfam PHD-finger 175 220 IPR019787 -
Arst6g01892 286 Pfam PHD-finger 17 62 IPR019787 -
Arst6g01892 286 SUPERFAMILY FYVE/PHD zinc finger 112 174 IPR011011 -
Arst6g01892 286 SMART PHD_3 16 62 IPR001965 -
Arst6g01892 286 SMART PHD_3 175 220 IPR001965 -
Arst6g01892 286 SMART PHD_3 125 174 IPR001965 -
Arst6g01892 286 SUPERFAMILY FYVE/PHD zinc finger 174 228 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst6g01892 Arst-Chr6 23862584 23864264 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst6g01892 17 62 C2H2 Transcription Factor Family AT3G01460 36.957 8.76e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Arst6g01892 PHD 2.1e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst6g01892 - - adu:107493425 625.935